View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14151_low_53 (Length: 212)

Name: NF14151_low_53
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14151_low_53
NF14151_low_53
[»] chr7 (2 HSPs)
chr7 (4-201)||(21930675-21930873)
chr7 (4-72)||(24339689-24339757)
[»] chr1 (7 HSPs)
chr1 (4-87)||(31694639-31694722)
chr1 (34-90)||(22515824-22515880)
chr1 (8-87)||(40917800-40917879)
chr1 (34-87)||(18471361-18471414)
chr1 (38-87)||(21365992-21366041)
chr1 (34-87)||(51410091-51410144)
chr1 (4-72)||(5944330-5944398)
[»] chr2 (4 HSPs)
chr2 (5-87)||(35056916-35056998)
chr2 (37-87)||(29176368-29176418)
chr2 (4-64)||(36756296-36756356)
chr2 (43-87)||(44635568-44635612)
[»] chr5 (3 HSPs)
chr5 (4-88)||(39698588-39698672)
chr5 (44-87)||(131824-131867)
chr5 (31-87)||(42893423-42893479)
[»] chr8 (2 HSPs)
chr8 (4-67)||(29655927-29655990)
chr8 (33-89)||(4498368-4498424)
[»] scaffold0053 (1 HSPs)
scaffold0053 (34-87)||(8864-8917)
[»] chr4 (5 HSPs)
chr4 (7-72)||(15724498-15724563)
chr4 (41-87)||(12047339-12047385)
chr4 (8-68)||(19312386-19312446)
chr4 (34-90)||(28964185-28964241)
chr4 (34-70)||(34306761-34306797)
[»] chr3 (2 HSPs)
chr3 (4-85)||(4987222-4987303)
chr3 (34-87)||(55401141-55401194)
[»] chr6 (2 HSPs)
chr6 (4-64)||(16766744-16766804)
chr6 (4-64)||(9522938-9522998)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 21930675 - 21930873
Alignment:
Q  4 agtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatagttattaatgnnnnnnn 103  Q
    ||||||| ||||||||||||| |||| |||| |||| |||||| ||| ||||| ||||||| || |||  ||||| |||||||||||||||||           
T  21930675 agtgtcgatgtcgtgtcagtgttggacacaagacgtgtccgacgccggaacacacctaatccgaagagagtccatgcttcatagttattaatgttttttt 21930774  T
Q  104 nnnnnn-ctaaacagaatgaatcagatactacacnnnnnnnctgttcacttagttaagctgcaccactaattgttgtgacagattgtacctgttttcat 201  Q
           ||||||||||||||||||||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21930775 tctttttctaaacagaatgaatcagatactgcactttttttctgttcacttagttaagctgcaccactaattgttgtgacagattgtacctgttttcat 21930873  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 24339689 - 24339757
Alignment:
Q  4 agtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagt 72  Q
    ||||||||||||||||| |||  ||| || |||||||||||||||||  |||||||||||| |||||||    
T  24339689 agtgtcggtgtcgtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagt 24339757  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 31694722 - 31694639
Alignment:
Q  4 agtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 87  Q
    ||||||||||||||||| |||  ||| ||||||| ||| |||||||| ||||||||||||||||||||| ||| | ||||||||    
T  31694722 agtgtcggtgtcgtgtcggtgtcggacacaacacatattcgacaccggaacacgcctaatctgaggagtgtccgtgcttcatag 31694639  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 22515880 - 22515824
Alignment:
Q  34 acacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatagtta 90  Q
    |||| ||||||||||||| |||||||||||| ||||||| ||| | |||||||||||    
T  22515880 acacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatagtta 22515824  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 40917800 - 40917879
Alignment:
Q  8 tcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 87  Q
    ||||||||||||| ||| |||| || |||||| ||||||||||  |||||||||||| ||||| | ||| | ||||||||    
T  40917800 tcggtgtcgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcatag 40917879  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 18471361 - 18471414
Alignment:
Q  34 acacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 87  Q
    |||||| |||||||||||||||| ||||||  ||||||| ||| ||||||||||    
T  18471361 acacgtgtccgacaccgaaacacacctaattcgaggagtgtccgtacttcatag 18471414  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 21366041 - 21365992
Alignment:
Q  38 gtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 87  Q
    |||||||||||||| |||||||||||| ||||||| ||| | ||||||||    
T  21366041 gtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 21365992  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 51410091 - 51410144
Alignment:
Q  34 acacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 87  Q
    |||||||||||||||||| ||||||||||||  |||||||| | | ||||||||    
T  51410091 acacgtatccgacaccgagacacgcctaatccaaggagtattcgtgcttcatag 51410144  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 5944330 - 5944398
Alignment:
Q  4 agtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagt 72  Q
    |||||||||||||||||  ||| ||| ||||||| | ||||||||||  | |||||||||| |||||||    
T  5944330 agtgtcggtgtcgtgtcgatgacggacacaacacatgtccgacaccgggatacgcctaatccgaggagt 5944398  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 35056916 - 35056998
Alignment:
Q  5 gtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 87  Q
    |||||||||||||||| |||  ||| || |||||| |||||||| ||||||||||||||||||||||| ||| | ||||||||    
T  35056916 gtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcatag 35056998  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 29176418 - 29176368
Alignment:
Q  37 cgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 87  Q
    |||||||||||||||||||||||||||| ||| ||| | ||| ||||||||    
T  29176418 cgtatccgacaccgaaacacgcctaatccgagaagtgttcatgcttcatag 29176368  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 36756356 - 36756296
Alignment:
Q  4 agtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatc 64  Q
    |||||||||||||||| ||||  | | ||||||| | |||||||||| |||||||||||||    
T  36756356 agtgtcggtgtcgtgttagtgtcgaacacaacacatgtccgacaccgcaacacgcctaatc 36756296  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 44635568 - 44635612
Alignment:
Q  43 cgacaccgaaacacgcctaatctgaggagtatccatacttcatag 87  Q
    ||||||||| |||||||||||||||||||| ||| | ||||||||    
T  44635568 cgacaccgagacacgcctaatctgaggagtgtccgtgcttcatag 44635612  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 39698588 - 39698672
Alignment:
Q  4 agtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatagt 88  Q
    |||||| |||||||||| |||  ||| || ||| |||||||||||||| |||||||||||| ||||||| ||| | |||||||||    
T  39698588 agtgtcagtgtcgtgtcggtgtcggacacgacatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatagt 39698672  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 131824 - 131867
Alignment:
Q  44 gacaccgaaacacgcctaatctgaggagtatccatacttcatag 87  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||    
T  131824 gacaccgaaacatgcctaatctaaggagtgtccatacttcatag 131867  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 42893423 - 42893479
Alignment:
Q  31 acaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 87  Q
    ||||||||| |||||||||   ||||||||||| |||||||| ||||| ||||||||    
T  42893423 acaacacgtgtccgacaccaggacacgcctaatatgaggagtgtccatgcttcatag 42893479  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 29655990 - 29655927
Alignment:
Q  4 agtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctga 67  Q
    ||||| || ||||||||||||  ||| ||||||| |||| ||||||||||||||||||||||||    
T  29655990 agtgtaggcgtcgtgtcagtgtcggacacaacacatatctgacaccgaaacacgcctaatctga 29655927  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 4498368 - 4498424
Alignment:
Q  33 aacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatagtt 89  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||| | |||| |||||    
T  4498368 aacatgtatccgacaccgaaacacacctaatcagaggagtgtccgtgcttcttagtt 4498424  T

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Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 8864 - 8917
Alignment:
Q  34 acacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 87  Q
    |||||| ||||||||||| |||||||||||||||||||| ||| | ||||||||    
T  8864 acacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcatag 8917  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 15724563 - 15724498
Alignment:
Q  7 gtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagt 72  Q
    |||||||||||||| |||  ||| ||||||||| || |||||| |||||||||||||| |||||||    
T  15724563 gtcggtgtcgtgtcggtgtcggacacaacacgtgtcagacaccaaaacacgcctaatccgaggagt 15724498  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 12047385 - 12047339
Alignment:
Q  41 tccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 87  Q
    ||||||||| |||||||||||||| |||||| |||||| ||||||||    
T  12047385 tccgacaccaaaacacgcctaatccgaggagcatccatgcttcatag 12047339  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 19312386 - 19312446
Alignment:
Q  8 tcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgag 68  Q
    |||||||||||||  ||  |||||| |||||| ||||||||||| ||||| ||||||||||    
T  19312386 tcggtgtcgtgtcgttgtcggatacgacacgtgtccgacaccgagacacgtctaatctgag 19312446  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 28964241 - 28964185
Alignment:
Q  34 acacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatagtta 90  Q
    |||| |||||||||| |  |||||||||||| ||||||| ||||| |||||||||||    
T  28964241 acacatatccgacactgggacacgcctaatccgaggagtgtccatgcttcatagtta 28964185  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 34306797 - 34306761
Alignment:
Q  34 acacgtatccgacaccgaaacacgcctaatctgagga 70  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  34306797 acacgtgtccgacaccgagacacgcctaatctgagga 34306761  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 4987303 - 4987222
Alignment:
Q  4 agtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcat 85  Q
    ||||| |||| |||||| ||| |||| || |||||| ||||||||||  |||||||||||| ||||||| ||| ||||||||    
T  4987303 agtgttggtgacgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 55401141 - 55401194
Alignment:
Q  34 acacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 87  Q
    |||||| ||||||||||| |||||||||||| ||||||| ||| | ||||||||    
T  55401141 acacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 16766744 - 16766804
Alignment:
Q  4 agtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatc 64  Q
    ||||||||||||||||| |||  ||| ||||||||| ||||||||||  ||||||||||||    
T  16766744 agtgtcggtgtcgtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatc 16766804  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 9522938 - 9522998
Alignment:
Q  4 agtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatc 64  Q
    ||||||||||| ||||| |||  |||| | |||||| ||||||||||| ||||||||||||    
T  9522938 agtgtcggtgttgtgtcggtgtcggatccgacacgtgtccgacaccgagacacgcctaatc 9522998  T

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