View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14151_low_6 (Length: 551)
Name: NF14151_low_6
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_low_6 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 36374559 - 36374049
Alignment:
| Q |
1 |
ctaaatttacatgcataattacaagtttgaaagcatggtcgatctggtaaaatcacagttgcatagtgattttcttgaagtttcaaagtgtaatttttga |
100 |
Q |
| |
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||||||||||||| ||||||| |||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
36374559 |
ctaaatttacatgtataattaaaagtttgaaatcatggtggatctggtaaaatcacagctgcatagtgattttcttgaagtttcaaagtgtaacttttgg |
36374460 |
T |
|
| Q |
101 |
aaaatcgcagtggtgcactgtgattttatcaaattcattccgagatcaaacatgcataggttattgttaagtttttacttgacttacaatgggttcagaa |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
36374459 |
aaaatcgcagtgacacactgtgattttatcaaattcattgcgagttcaaacatgcatagattattcataagtttttacttgacttacaatgggttcagaa |
36374360 |
T |
|
| Q |
201 |
atgtatcgtatctcagttttcacaaagccgcatgtacggcagtatattccaatttgttcatccaatcgataatcatgttcacatatttcgttggattcct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| | |
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| T |
36374359 |
atgtatcgtatctcagttttcacaaagccgcatgtacggcagtatattccaatttgttcatccaatcgataatcatgtttac------------attctt |
36374272 |
T |
|
| Q |
301 |
tctctgtgtcagctaaaacttcatcagcatctgcaccctgctatggtatttaatagttgaacataatcagcctttagccttaaaatagacgataaaacca |
400 |
Q |
| |
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| | ||||||||||||||| |||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36374271 |
tatttgtgtcagctaaaacctcatcaccatttgcaccctgctatggtatataataattgaacataatcagcctttagccttaaaatagacggtaaaacca |
36374172 |
T |
|
| Q |
401 |
aaaaacaacgtatttaaatcatatatattgtgagtgtaaaacttctttacaccacctatatattataattgtcatatcattaaacatatttgacttcaac |
500 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||||||||||||| ||||| |||||| || |||| ||||||||||||||||||||||||||||||| |
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| T |
36374171 |
aaaaacaaagtatttatatcatatata-tgtgagtgtaaaacttctgtacactgcctataaatcataactgtcatatcattaaacatatttgacttcaac |
36374073 |
T |
|
| Q |
501 |
cataaatggttcaacagtcaatca |
524 |
Q |
| |
|
||||||||||||||| |||||||| |
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| T |
36374072 |
cataaatggttcaactgtcaatca |
36374049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 51 - 514
Target Start/End: Original strand, 12069633 - 12070085
Alignment:
| Q |
51 |
aatcacagttgcatagtgattttcttgaagtttcaaagtgtaatttttgaaaaatcgcagtggtgcactgtgattttatcaaattcattccgagatcaaa |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| ||| |||||||||| |||||||| ||| | | || ||||| |
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|
| T |
12069633 |
aatcacagttgcatagtgattttcttgaagtttcaatgtgtaacttttggaaaatcgcactggcgcactgtgatcttatcaaactcaatgccagttcaaa |
12069732 |
T |
|
| Q |
151 |
catgcataggttattgttaagtttttacttgacttacaatgggttcagaaatgtatcgtatctcagttttcacaaagccgcatgtacggcagtatattcc |
250 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
12069733 |
catgcatga---------aagtttttacttgacttacaatgggttcataaatgtatcgtatctcagttttcacaaagtcgcatgtatggcagtatattcc |
12069823 |
T |
|
| Q |
251 |
aatttgttcatccaatcgataatcatgttcacatatttcgttggattccttctctgtgtcagctaaaacttcatcagcatctgcaccctgctatggtatt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||| |||| |||| ||||||||||||| | |||||||||| ||||||||||||||||| | |
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|
| T |
12069824 |
aatttgttcatccaatcgataatcatgttctcatatttccttgaattctttctttgtgtcagctaaatcctcatcagcatttgcaccctgctatggtaat |
12069923 |
T |
|
| Q |
351 |
taatagttgaacataatcagcctttagccttaaaatagacgataaaaccaaaaaacaacgtatttaaatcatatatattgtgagtgtaaaacttctttac |
450 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||| |||||| | | || |
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| T |
12069924 |
taatatttgaacataatcagcctttagccttaaaatagaagataaaaccaaaaaacaaagtatttaattcatatatattgtga--ctaaaacatttgcac |
12070021 |
T |
|
| Q |
451 |
accacctatatattataattgtcatatcattaaacatatttgacttcaaccataaatggttcaa |
514 |
Q |
| |
|
|| |||| || |||||||||| ||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
12070022 |
actgtctatcaatcataattgtcacatccttaaacatatttgacttgaaccataaatggttcaa |
12070085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 172 - 323
Target Start/End: Original strand, 32251159 - 32251310
Alignment:
| Q |
172 |
tttttacttgacttacaatgggttcagaaatgtatcgtatctcagttttcacaaagccgcatgtacggcagtatattccaatttgttcatccaatcgata |
271 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||||| ||||||||||||| || ||| | | |||||||||||||||| ||||||||||| ||| |
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|
| T |
32251159 |
tttttacttgacttacaaatggctcagaaatgtcccgtattgcagttttcacaaatccacatcgaagacagtatattccaatttcttcatccaatctata |
32251258 |
T |
|
| Q |
272 |
atcatgttcacatatttcgttggattccttctctgtgtcagctaaaacttca |
323 |
Q |
| |
|
|||||||||||| |||| ||| |||| |||| || ||||||| ||||||| |
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|
| T |
32251259 |
atcatgttcacaactttcattgaattctttcttggtatcagctacaacttca |
32251310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 172 - 303
Target Start/End: Complemental strand, 38208308 - 38208178
Alignment:
| Q |
172 |
tttttacttgacttacaatgggttcagaaatgtatcgtatctcagttttcacaaagccgcatgtacggcagtatattccaatttgttcatccaatcgata |
271 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| || || ||| |||||||||||||||||| || || |||||||||||||| |||||| ||| ||| |
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| T |
38208308 |
tttttacttaacttacaaagggttcagaaatgtctcctacctcggttttcacaaagccgcatctaagg-tgtatattccaatttcttcatctaatttata |
38208210 |
T |
|
| Q |
272 |
atcatgttcacatatttcgttggattccttct |
303 |
Q |
| |
|
| ||| ||||| |||| ||| ||||||||| |
|
|
| T |
38208209 |
gttatgctcacaaatttacttgaattccttct |
38208178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 32228772 - 32228841
Alignment:
| Q |
335 |
accctgctatggtatttaatagttgaacataatcagcctttagccttaaaatagacgataaaaccaaaaa |
404 |
Q |
| |
|
||||||||||||||| |||||||||||| || |||||||||||| | ||||||| |||||||||||||| |
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|
| T |
32228772 |
accctgctatggtatataatagttgaactaaagcagcctttagccatgaaatagaagataaaaccaaaaa |
32228841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 32228619 - 32228654
Alignment:
| Q |
179 |
ttgacttacaatgggttcagaaatgtatcgtatctc |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32228619 |
ttgacttacaatgggttcagaaatgtctcgtatctc |
32228654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 405
Target Start/End: Complemental strand, 38208149 - 38208079
Alignment:
| Q |
335 |
accctgctatggtatttaatagttgaacataatcagcctttagccttaaaatagacgataaaaccaaaaaa |
405 |
Q |
| |
|
|||||||||| |||| |||||||||||| ||||| |||||||||| |||||| |||||||||||||| |
|
|
| T |
38208149 |
accctgctattgtatataatagttgaactgaatcaagatttagccttagaatagaatataaaaccaaaaaa |
38208079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 261
Target Start/End: Original strand, 8845552 - 8845641
Alignment:
| Q |
172 |
tttttacttgacttacaatgggttcagaaatgtatcgtatctcagttttcacaaagccgcatgtacggcagtatattccaatttgttcat |
261 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||| || | ||| ||||||| |||| ||||| |
|
|
| T |
8845552 |
tttttacttgacttacaactggttcagaaatgtctcgtatctcggttttcacagagccgcagctaagacagaatattccgatttcttcat |
8845641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 8809654 - 8809724
Alignment:
| Q |
164 |
ttgttaagttttt--acttgacttacaatgggttcagaaatgtatcgtatctcagttttcacaaagccgca |
232 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||| ||||||||| |||||| | |||||| ||||||| |
|
|
| T |
8809654 |
ttgttaagttttttcacttgacttacaatgtgttcataaatgtatcatatctcgttattcacagagccgca |
8809724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 403
Target Start/End: Original strand, 8845692 - 8845768
Alignment:
| Q |
327 |
gcatctgcaccctgctatggtatttaatagttgaacataatcagcctttagccttaaaatagacgataaaaccaaaa |
403 |
Q |
| |
|
|||| || ||||||| | ||||| ||||||||||| |||||||||||| ||||| || ||| ||||||||||||| |
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|
| T |
8845692 |
gcatttgaaccctgcaacggtatataatagttgaaatgaatcagcctttaaccttagaaaagaagataaaaccaaaa |
8845768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 35960810 - 35960873
Alignment:
| Q |
220 |
tcacaaagccgcatgtacggcagtatattccaatttgttcatccaatcgataatcatgttcaca |
283 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||||| ||||||||||| || |||||||||||| |
|
|
| T |
35960810 |
tcacaaagccacatatacagcagtatattccaatttcttcatccaatctattatcatgttcaca |
35960873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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