View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_low_8 (Length: 540)
Name: NF14151_low_8
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 27233084 - 27233349
Alignment:
| Q |
18 |
tttattaactcaaccaaatccattctcccaatggaagtgctcagagtcaaaattctattggttggttattgcaatatcttgttctttctggtaatatatt |
117 |
Q |
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| T |
27233084 |
tttattaactcaaccaaatccattctcccaatggaagtgctcagagtcaaaattctattggttggttattgcaatatcttgttctttctggtaatatatt |
27233183 |
T |
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| Q |
118 |
tcacttatatttatacgtttgatccaattttggagaatgcgtgaagatttggagagcacgtaaagaatttctctcgtccatttcaatatgcttatgatat |
217 |
Q |
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| T |
27233184 |
tcacttatatttgtacgtttgatccaattttggagaatgcgtgaagatttggagagcacgtaaagaatttctctcgtccatttcaatatgcctatgatat |
27233283 |
T |
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| Q |
218 |
tgacatgt---ttagactcataggtggacgaatccggattgcctataaaa--ttctttcatattaa |
278 |
Q |
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| T |
27233284 |
tgacatgtttattagactcataggtggacgaatccggattgcctatgaaattttctttcatattaa |
27233349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 349 - 540
Target Start/End: Original strand, 27233422 - 27233616
Alignment:
| Q |
349 |
cctttcatatctatcattcatcaatcaaataatttgtaaagatcaatgcatggactgatttattgtg--atttaaggactaaaatacgcttttatttttt |
446 |
Q |
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| T |
27233422 |
cctttcatatctatcattcatcaatcaaataatttgtaaagatcaatgcatggactgatttattgtgtgatttaagtactaaaatacgcttttatttttt |
27233521 |
T |
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| Q |
447 |
caaggatagactaaatcagattttaagaattttctcaaggattttgtc-nnnnnnnnngaaaagaattttatcaaggattaaaatggttattcat |
540 |
Q |
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| T |
27233522 |
caaggatagactaattcggattttaagaattttctcaaggattttgtcaaaaaaaaaagaaaagaattttatcaaggattaaaatggttattcat |
27233616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 12263754 - 12263978
Alignment:
| Q |
18 |
tttattaactcaaccaaatccattctcccaatggaagtgctcagagtcaaaattctattggttggttattgcaatatcttgttctttctggtaatatatt |
117 |
Q |
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|||||||||||||||||| ||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| || |
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| T |
12263754 |
tttattaactcaaccaaaaccattatctcaatggaagtgctaagagtcaaaattctattggttggttattgcaatatcatgttctttttggtaatatctt |
12263853 |
T |
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| Q |
118 |
tcactta---tatttatacgtttgatccaattttggagaatgcgtgaagatttggagagcacgtaaagaatttctctcgtccatttcaatatgcttatga |
214 |
Q |
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| T |
12263854 |
tcacatcacctattaatacatttgatccagttttggagaatgcgtgaagatttggagagtacgtaaataatttctttcgtccatttcaatatgcctatga |
12263953 |
T |
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| Q |
215 |
tattgacatgtttagactcataggt |
239 |
Q |
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| T |
12263954 |
tattgacatgtttagactcataggt |
12263978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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