View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_high_13 (Length: 441)
Name: NF14152_high_13
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 55163267 - 55162863
Alignment:
| Q |
18 |
gttccaaataaattgcctacaaatacagaatgaaggcaatcagattcaatttaacaaaaagataataacagattttgatcttagtcctctagtattgatt |
117 |
Q |
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| T |
55163267 |
gttccaaataaattgcctacaaatacagaatgaaggcaatcagattcattttaacaaaaagataataacacattttgatgttagtcctctagtattgatt |
55163168 |
T |
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| Q |
118 |
atataaaaacgaaaaatgaatactacaaacattacaagaaatatgtatagctgcaaggcttaaaaacaaatatataattgtggtnnnnnnn-catattga |
216 |
Q |
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| T |
55163167 |
atataaaaacgaaaaatgaatactacaaacattacaagaaatatgtatagctggaaggcttaaaaacaaatatataattgtggtaaaaaaaacatattaa |
55163068 |
T |
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| Q |
217 |
aacatttatttattcatttttgtagaacttgaattcctctagctagctagctacctcacctgagtatcatgatcaagtgtgttgcttatatcaatctcag |
316 |
Q |
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| T |
55163067 |
aacatttatttattcatttttgtagaacttgaattcctctagctagcta----cctcacctgagtatcatgatcaagtgtgttgcttatatcaatctcag |
55162972 |
T |
|
| Q |
317 |
taagccaaacgggaagatctagtgttgccaatttgtctaggatagctcttataagtggaagatttggtattgtgaagtgaccctcgagaccaattccatc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162971 |
taagccaaacgggaagatctagtgttgccaatttgtctaggatagctcttataagtggaagatttggtattgtgaagtgaccctcgagaccaattccatc |
55162872 |
T |
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| Q |
417 |
cataaaaac |
425 |
Q |
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| T |
55162871 |
cataaaaac |
55162863 |
T |
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