View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_high_14 (Length: 439)
Name: NF14152_high_14
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Complemental strand, 48483946 - 48483537
Alignment:
| Q |
19 |
tgttcagagcacaacaaaggacctctacttacttcctgcattacctcgtgataaatgggcaaatggttgtgtgaaaggattaaaagcgcgtggcggtgtt |
118 |
Q |
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| T |
48483946 |
tgttcagagcacaacaaaggacctctacttacttcctgcattacctcgtgataaatgggcaaatggttgtgtgaaaggattaaaagcgcgtggcggtgtt |
48483847 |
T |
|
| Q |
119 |
acggtcaacatctgttggaaagaaggaaatttgcatgaagttggcctttggtgtcaaaaccagaattccaaaatgagactacattataaagggagcatgg |
218 |
Q |
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| T |
48483846 |
acggtcaacatctgttggaaagaaggaaatttgcatgaagttggcctttggtgtcaaaaccagaattccaaaatgagactacattataaagggagcatgg |
48483747 |
T |
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| Q |
219 |
tcgtgacaaatttatcaccaggcaaagtttactcgtataataattggttgaggtgtattaaaacatacccccttaatgaggtgaatctttaatctttttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48483746 |
tcgtgacaaatttatcaccaggcaaagtttactcgtataataattggttgaggtgtattaaaacatacccccttaatgaggtgaatctttaatctttttt |
48483647 |
T |
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| Q |
319 |
gtattccaattttccaataaagttttaagtgacatgcataacttttttacaatttgttattggacatagtgtgctggatcatggtattggtatattttct |
418 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
48483646 |
gtcttccaattttccaataaagttttaagtgacatgcataacttttttacaatttgttattggacatagtctgccggatcatggtattggtatattttct |
48483547 |
T |
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| Q |
419 |
tgtgtcctat |
428 |
Q |
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||| |||||| |
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| T |
48483546 |
tgtttcctat |
48483537 |
T |
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