View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_high_17 (Length: 414)
Name: NF14152_high_17
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 31112213 - 31111826
Alignment:
| Q |
18 |
cttaatatatggcaatatgaccttagaccattcttgaaaataaagcatttaagcttgtcgttcactccacaaacttcaaatacttctctggtgaatcttt |
117 |
Q |
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| T |
31112213 |
cttaatatatg-caatatgaccttagaccattcttgaaaataaagcatttaagcttgtcgttcactccacaaacttcaaatacttctctggtgaatcttt |
31112115 |
T |
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| Q |
118 |
cgatatattttaggagtgtttccnnnnnnnggactgtaatgataagaggggattttttaggtctctcacgggatgaaggagtgtgactgcttacgcctcc |
217 |
Q |
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| T |
31112114 |
cgatatattttaggagtgtttcctttttttggactgtaatgataagaggggattttttaggtctctcacgggatgaaggagtgtgaccgcttacgcctcc |
31112015 |
T |
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| Q |
218 |
gtctgaatcgtgcaaaggagatcctccgcaacgaggagaagaaggaactttgtgccatggatcctgattttcatctttctcagaagcaacattttctacc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31112014 |
gtctgaatcgtgcaaaggagatcctccgcaacgaggagaaaaaggaactttgtgccatggatcctgattttcatctttctcagaagcaacattttctacc |
31111915 |
T |
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| Q |
318 |
acattcattggagtggcggtttgttgatttcgttgaacgaccttaatttaagtcacatttgcagcagaaattttatattgatattcttc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31111914 |
acattcattggagtggcggtttgttgatttcgttgaacgaccttaatttaagtcacatttgcagcagaaattttatattgattttcttc |
31111826 |
T |
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