View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_high_2 (Length: 710)
Name: NF14152_high_2
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 13 - 691
Target Start/End: Original strand, 43867369 - 43868047
Alignment:
| Q |
13 |
gtgagatgaaagcaacctaaggagaggggacctcaaatagcagacattattgaattattatacatgtaacacaacaaatatgtcttactcaaaaatttaa |
112 |
Q |
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| T |
43867369 |
gtgagatgaaagcaacctaaggagaggggacctcaaatagcagacattattgaattattatacatgtaacacaacaaatatgtcttactcaaaaatttaa |
43867468 |
T |
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| Q |
113 |
tgcacaaaccctaatgggtccataagaaatcctataattaaaaagacaaccaattagaattcagagaataagattaacttcaactctctagccaatcaac |
212 |
Q |
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| T |
43867469 |
tgcacaaaccctaatgggtccataagaaatcctataattaaaaagacaaccaattagaattcagagaataagattaacttcaactctctagccaatcaac |
43867568 |
T |
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| Q |
213 |
actaagatcataccaattggtgggtcccattaacctccattaatattcctgtagcaaattaccaaaagtgcatgggcagagagaagnnnnnnnn------ |
306 |
Q |
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| T |
43867569 |
actaagatcataccaattggtgggtcccattaacctccattaatattcctgtagcaaattaccaaaagtgcatgggcagagagaaaaaaaaaaaaaaaaa |
43867668 |
T |
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| Q |
307 |
gtacctactgacactagtgtgtctccttcatcacattgtctagtttcaacaaacacaaaccattaattgaatcannnnnnnnnnnnngacataaaacaat |
406 |
Q |
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| T |
43867669 |
gtacctactgacactagtgtgtctccttcatcacattgtctagtttcaacaaacacaaaccattaattgaatcattttttt------gacataaaacaat |
43867762 |
T |
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| Q |
407 |
atagtttagttatattctatgattatagacatgaaaggtgatgcagatgcaggtgccttgggagccaagacagcaagagcatgtgatagctgtttaagaa |
506 |
Q |
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| T |
43867763 |
atagtttagttatattctatgattatagacatgaaaggtgatgcagatgcaggtgccttgggagccaagacagcaagagcatgtgatagctgtttaagaa |
43867862 |
T |
|
| Q |
507 |
gaagagcacgttggttttgtgctgcagatgatgctttcctttgtcatggttgtgacaatttggttcactctgcaaatctattagcaagtagacacgaaag |
606 |
Q |
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| T |
43867863 |
gaagagcacgttggttttgtgctgcagatgatgctttcctttgtcatggttgtgacaatttggttcactctgcaaatctattagcaagtagacacgaaag |
43867962 |
T |
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| Q |
607 |
ggttcgccttcaaaccgcatctgctaaggtaacaacaacagcacaagcatggcacagtggattcacaaggaaagcaagaactccc |
691 |
Q |
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| T |
43867963 |
ggttcgccttcaaaccgcgtctgctaaggtaacaacaacagcacaagcatggcacagtggattcacaaggaaagcaagaactccc |
43868047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 50056137 - 50056084
Alignment:
| Q |
509 |
agagcacgttggttttgtgctgcagatgatgctttcctttgtcatggttgtgac |
562 |
Q |
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| T |
50056137 |
agagcacgttggtattgtgctgctgatgatgcttttctctgtcaagcttgtgac |
50056084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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