View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_high_20 (Length: 396)
Name: NF14152_high_20
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_high_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 55162506 - 55162886
Alignment:
| Q |
16 |
atcatagctagagggcacaatatattctgggaagaccctaaatacaatcctgcatgggttcttaaccttacaggtacacagttaagatctgctgtgaatt |
115 |
Q |
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| T |
55162506 |
atcatagctagagggcacaatatattctgggaagaccctaaatacaatcctgcatgggttcttaaccttacaggtacacagttaagatctgctgtgaatt |
55162605 |
T |
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| Q |
116 |
cacgaattcaaagtctcatgaaccaatacaaaacagaattcatacattgggatatcagtaacgaaatgcttcattttgatttctacgaacaaaggcttgg |
215 |
Q |
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| T |
55162606 |
cacgaattcaaagtctcatgaaccaatacaaaacagaattcatacattgggatatcagtaacgaaatgcttcattttgatttctacgaacaaaggcttgg |
55162705 |
T |
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| Q |
216 |
acccaatgctacatttcatttctttgaggcagcacatgaatcagatcctctagcaactctgtttatgaatgacttcaatgttgtagaaacgtgcagtgat |
315 |
Q |
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| T |
55162706 |
acccaatgctacatttcatttctttgaggcagcacatgaatcagatcctctagcaactctgtttatgaatgacttcaatgttgtagaaacgtgcagtgat |
55162805 |
T |
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| Q |
316 |
gtaaattctagcgttgacgcttatatctcgcgaataagagaactaagacaatatggtgtttttatggatggaattggtctc |
396 |
Q |
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| T |
55162806 |
gtaaattctagcgttgacgcttatatctcgcgaataagagaactaagacaatatggtgtttttatggatggaattggtctc |
55162886 |
T |
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