View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14152_high_23 (Length: 378)

Name: NF14152_high_23
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14152_high_23
NF14152_high_23
[»] chr7 (2 HSPs)
chr7 (1-366)||(1785918-1786282)
chr7 (268-361)||(24840535-24840630)
[»] chr1 (5 HSPs)
chr1 (3-183)||(8966285-8966465)
chr1 (268-365)||(28660370-28660467)
chr1 (278-365)||(23987957-23988044)
chr1 (284-365)||(13443609-13443690)
chr1 (222-271)||(23987867-23987916)
[»] chr2 (4 HSPs)
chr2 (287-365)||(33054058-33054136)
chr2 (268-365)||(33051917-33052014)
chr2 (285-365)||(31634471-31634551)
chr2 (278-365)||(27955800-27955887)
[»] chr6 (4 HSPs)
chr6 (268-352)||(8048599-8048683)
chr6 (271-352)||(24442701-24442782)
chr6 (322-365)||(14238864-14238907)
chr6 (124-218)||(3537692-3537786)
[»] chr8 (7 HSPs)
chr8 (268-358)||(26375248-26375338)
chr8 (268-362)||(5646692-5646786)
chr8 (275-357)||(18180341-18180423)
chr8 (278-365)||(23570853-23570940)
chr8 (147-218)||(22924997-22925068)
chr8 (278-365)||(42890755-42890842)
chr8 (278-365)||(42891315-42891402)
[»] scaffold0240 (2 HSPs)
scaffold0240 (268-366)||(16385-16483)
scaffold0240 (225-271)||(16308-16354)
[»] chr5 (2 HSPs)
chr5 (97-218)||(28252759-28252884)
chr5 (284-365)||(19496925-19497006)


Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 1785918 - 1786282
Alignment:
Q  1 agaacactcatcagccctttgctcaccactagacataaacattaagtttcctaaacagaattatcaagttccttttcatgttctgttattaccaagaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1785918 agaacactcatcagccctttgctcaccactagacataaacattaagtttcctaaacagaattatcaagttccttttcatgttctgttattaccaagaaac 1786017  T
Q  101 tagacttattttctcttgggcttttatcaaagtgaaaaacacgggccatagcaatcttatgtgtaccccatgtaaacatcatctcattatctcctccctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1786018 tagacttattttctcttgggcttttatcaaagtgaaaaacacgagccatagcaatcttatgtgtaccccatgtaaacatcatctcattatctcctccctg 1786117  T
Q  201 ataagtaatatcattatctcctccgaacagggaaggggtaccaattctggttattagggttcataataacatacccgtgaatatgatttggaatactatg 300  Q
    |||||||||||||||||||||||||||| ||||||| |||  ||||| ||||||||| |||  |||||||||| || | |||||||||||||||||||||    
T  1786118 ataagtaatatcattatctcctccgaactgggaaggagtataaattccggttattagagttggtaataacata-ccataaatatgatttggaatactatg 1786216  T
Q  301 agcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatatt 366  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||    
T  1786217 agcgcaaatattacaataaactgaaggatgattactacaattttaaaatctctaattcgaaatatt 1786282  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 24840535 - 24840630
Alignment:
Q  268 aacatacccgtgaatatgatttggaata--ctatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgat 361  Q
    ||||||||||||||| |||||| |||||  ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||    
T  24840535 aacatacccgtgaatctgatttagaatatactatgagcgtaaatattacaaaaaactgaaggatgattactacaagtttaaaatctctaattcgat 24840630  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 8966285 - 8966465
Alignment:
Q  3 aacactcatcagccctttgctcaccactagacataaacattaagtttcctaaacagaattatcaagttccttttcatgttctgttattaccaagaaacta 102  Q
    ||||||||||| |||||||||||||||| |||| || |||| | |||| | |  || || || |||||||||||||| || ||| || |||||  ||| |    
T  8966285 aacactcatcaaccctttgctcaccactggacaaaagcattcaatttctttactagcatcattaagttccttttcattttgtgtcatcaccaaataacca 8966384  T
Q  103 gacttattttctcttgggcttttatcaaagtgaaaaacacgggccatagcaatcttatgtgtaccccatgtaaacatcatc 183  Q
    | ||| ||||||||| |||| ||||||||||| |||| | | |||||||||||||||||||| || |||||||||||||||    
T  8966385 gtcttcttttctcttaggctcttatcaaagtgtaaaataggagccatagcaatcttatgtgtgccacatgtaaacatcatc 8966465  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 365
Target Start/End: Complemental strand, 28660467 - 28660370
Alignment:
Q  268 aacatacccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatat 365  Q
    |||||||| |||||| |||| |||||||||||||||| | ||||||||| || ||||||||| |||||||||| |||||||||||||||| |||||||    
T  28660467 aacatacctgtgaatctgatatggaatactatgagcgtagatattacaaaaagctgaaggataattactacaagtttaaaatctctgatttgatatat 28660370  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 365
Target Start/End: Original strand, 23987957 - 23988044
Alignment:
Q  278 tgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatat 365  Q
    ||||| |||| |||||||||||||| | | ||||||||||||  ||||||||||||||||||| |||||||||||| |||||||||||    
T  23987957 tgaatctgatctggaatactatgagtgtatatattacaacaagttgaaggatgattactacaagtttaaaatctctaattcgatatat 23988044  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 13443690 - 13443609
Alignment:
Q  284 tgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatat 365  Q
    |||||||||||| |||||||| | |||||||||||   ||| ||||||||||||||| ||| ||||||||||||||||||||    
T  13443690 tgatttggaatattatgagcgtagatattacaacaggttgacggatgattactacaaatttgaaatctctgattcgatatat 13443609  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 23987867 - 23987916
Alignment:
Q  222 tccgaacagggaaggggtaccaattctggttattagggttcataataaca 271  Q
    ||||||||| |||||   ||||||||||||||||||||||| ||||||||    
T  23987867 tccgaacagagaaggatgaccaattctggttattagggttcttaataaca 23987916  T

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Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 33054136 - 33054058
Alignment:
Q  287 tttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatat 365  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||||||| | ||||||||||||||||||||||||    
T  33054136 tttggaatactatgagcgtaaatattacaacaagttgaaggatgattactacgagtttaaaatctctgattcgatatat 33054058  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 365
Target Start/End: Original strand, 33051917 - 33052014
Alignment:
Q  268 aacatacccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatat 365  Q
    |||||| ||||| || ||||||||||||||||||||| | ||||||||||||  |||| | |||||||||||| ||||||||||||||||||||||||    
T  33051917 aacatatccgtggatctgatttggaatactatgagcgtagatattacaacaagttgaatgttgattactacaagtttaaaatctctgattcgatatat 33052014  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 285 - 365
Target Start/End: Original strand, 31634471 - 31634551
Alignment:
Q  285 gatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatat 365  Q
    |||||||||||||||||||| | ||||||||  ||| ||||||||||||||||||| ||| ||||||||||||||||||||    
T  31634471 gatttggaatactatgagcgtagatattacacaaaattgaaggatgattactacaaatttgaaatctctgattcgatatat 31634551  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 365
Target Start/End: Complemental strand, 27955887 - 27955800
Alignment:
Q  278 tgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatat 365  Q
    ||||| ||||||||||||||||||||| | ||||||||  |   ||||||||||||| ||||| ||| ||||||| ||||||||||||    
T  27955887 tgaatctgatttggaatactatgagcgtagatattacacaaggttgaaggatgattattacaaatttgaaatctccgattcgatatat 27955800  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 352
Target Start/End: Complemental strand, 8048683 - 8048599
Alignment:
Q  268 aacatacccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctc 352  Q
    |||||||| |||||| ||||||||||||||||||||| | ||||||||||||| ||  ||||||||||||||| |||||||||||    
T  8048683 aacatacctgtgaatctgatttggaatactatgagcgtagatattacaacaaattgccggatgattactacaagtttaaaatctc 8048599  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 24442782 - 24442701
Alignment:
Q  271 atacccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctc 352  Q
    |||||| ||||| ||||||||||||||||||||| | |||||||||||   ||||||||||||||||||| |||||||||||    
T  24442782 atacccatgaatctgatttggaatactatgagcgtagatattacaacatgttgaaggatgattactacaagtttaaaatctc 24442701  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 322 - 365
Target Start/End: Original strand, 14238864 - 14238907
Alignment:
Q  322 tgaaggatgattactacaattttaaaatctctgattcgatatat 365  Q
    ||||||||||||||||| | ||||||||||||||||||||||||    
T  14238864 tgaaggatgattactactagtttaaaatctctgattcgatatat 14238907  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 3537786 - 3537692
Alignment:
Q  124 ttatcaaagtgaaaaacacgggccatagcaatcttatgtgtaccccatgtaaacatcatctcattatctcctccctcataagtaatatcattatc 218  Q
    |||||||| || |||||| | | ||||||||||||||  || ||||| ||||||| |||| ||||||| | ||||  ||||||||||||||||||    
T  3537786 ttatcaaattgtaaaacaggtgtcatagcaatcttataagttccccaagtaaacaacatcacattatcccgtccccgataagtaatatcattatc 3537692  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 268 - 358
Target Start/End: Original strand, 26375248 - 26375338
Alignment:
Q  268 aacatacccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattc 358  Q
    |||||| |||||||| ||||||| ||||||||||||| | ||||||||||||  ||||||||||||||||  | |||||||||||||||||    
T  26375248 aacatatccgtgaatctgatttgtaatactatgagcgtagatattacaacaagttgaaggatgattactatgagtttaaaatctctgattc 26375338  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 268 - 362
Target Start/End: Complemental strand, 5646786 - 5646692
Alignment:
Q  268 aacatacccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgata 362  Q
    |||||||| || ||| ||||||||| ||||||||  | | ||||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||    
T  5646786 aacatacctgtaaatctgatttggagtactatgaatgtagatattacaaaaaattgaaggatgattactacaagtttaaaatctccgattcgata 5646692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 357
Target Start/End: Complemental strand, 18180423 - 18180341
Alignment:
Q  275 ccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgatt 357  Q
    |||||||| |||||||||||||| |||||  | ||||||||||||  ||||||||||||||||| | ||||||||||| ||||    
T  18180423 ccgtgaatctgatttggaatactgtgagcatagatattacaacaagttgaaggatgattactacgagtttaaaatctccgatt 18180341  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 365
Target Start/End: Original strand, 23570853 - 23570940
Alignment:
Q  278 tgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatat 365  Q
    ||||| ||||||||||||||||||||| | ||||||||  |   ||||||||||||||||||| ||| ||||||| ||||| ||||||    
T  23570853 tgaatctgatttggaatactatgagcgtagatattacacaaggttgaaggatgattactacaaatttgaaatctccgattcaatatat 23570940  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 22924997 - 22925068
Alignment:
Q  147 catagcaatcttatgtgtaccccatgtaaacatcatctcattatctcctccctcataagtaatatcattatc 218  Q
    ||||||||||||||| || ||||| ||||||| |||| ||||||| | ||| | ||||||||||||||||||    
T  22924997 catagcaatcttatgagttccccaagtaaacaacatcacattatcccgtccttgataagtaatatcattatc 22925068  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 365
Target Start/End: Original strand, 42890755 - 42890842
Alignment:
Q  278 tgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatat 365  Q
    ||||| |||||||||||| |||||||| | ||||||||||||  ||| ||||||||||||| |  || ||||||| |||||| |||||    
T  42890755 tgaatctgatttggaatattatgagcgtagatattacaacaagttgacggatgattactacgagattgaaatctccgattcggtatat 42890842  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 365
Target Start/End: Complemental strand, 42891402 - 42891315
Alignment:
Q  278 tgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatat 365  Q
    ||||| |||||||||||| |||||| | | ||||||||||||  ||| ||||||||||||| |  || ||||||| |||||| |||||    
T  42891402 tgaatctgatttggaatattatgagtgtagatattacaacaagttgacggatgattactacgagattgaaatctccgattcggtatat 42891315  T

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Target: scaffold0240 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 16385 - 16483
Alignment:
Q  268 aacatacccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatatt 366  Q
    ||||||||||||||| |||||| | | | |||||||  | | ||||||| | ||||||||||||||||||||| ||||||||||  |||||||||||||    
T  16385 aacatacccgtgaatctgatttagtagagtatgagcatagacattacaaaacactgaaggatgattactacaagtttaaaatcttagattcgatatatt 16483  T

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Target: scaffold0240; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 16308 - 16354
Alignment:
Q  225 gaacagggaaggggtaccaattctggttattagggttcataataaca 271  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||||    
T  16308 gaacagggaaggagtaccaattttggttattagggctcataataaca 16354  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 28252759 - 28252884
Alignment:
Q  97 aaactagacttattttctcttgggcttttatcaaagtgaaaaacacgggccatagcaatctta--tgtgtaccccatgtaaacatcatctcattatctc- 193  Q
    ||||||| ||| |||||||||||||| ||||||||||| ||||||   | ||||| |||||||  |||||  |||||||||||||||||   |||||||     
T  28252759 aaactagtcttcttttctcttgggctcttatcaaagtgtaaaacataaggcatagaaatcttatgtgtgtgtcccatgtaaacatcatcatgttatctcg 28252858  T
Q  194 -ctccctcataagtaatatcattatc 218  Q
     |||||  | ||||||||||||||||    
T  28252859 tctccccaacaagtaatatcattatc 28252884  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 19497006 - 19496925
Alignment:
Q  284 tgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatat 365  Q
    |||||||||||||||||| || |  ||||| || ||| |||||||||||||| || | ||||||||||  ||||||| ||||    
T  19497006 tgatttggaatactatgaacgtaggtattaaaataaattgaaggatgattacaacgagtttaaaatctacgattcgaaatat 19496925  T

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