View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_high_24 (Length: 378)
Name: NF14152_high_24
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 32427713 - 32427492
Alignment:
| Q |
14 |
gagatgaaacccaaaacaaagatcgtgtgcacgctgggacctgcatcgaggtctgttccaatggtggagaagcttctacaagcaggcatgaatgttgctc |
113 |
Q |
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| T |
32427713 |
gagaagaaacccaaaacaaagatcgtgtgcacgctgggacctgcatcgaggtctgttccaatggtggagaagcttctacaagcaggcatgaatgtcgctc |
32427614 |
T |
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| Q |
114 |
gtttcaacttctctcatggttcctatgaatatcatcaggaaacgcttgataatcttagaaccgctatgcaaaataccggtattctctgcgccgtcatgct |
213 |
Q |
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| T |
32427613 |
gtttcaacttctctcatggttcctatgaatatcatcaggaaacgcttgataatcttagaaccgctatgcaaaataccggtattctctgcgccgtcatgct |
32427514 |
T |
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| Q |
214 |
tgacactaaggtattaaacttt |
235 |
Q |
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|||||||||||||||||||||| |
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| T |
32427513 |
tgacactaaggtattaaacttt |
32427492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 32421876 - 32421658
Alignment:
| Q |
14 |
gagatgaaacccaaaacaaagatcgtgtgcacgctgggacctgcatcgaggtctgttccaatggtggagaagcttctacaagcaggcatgaatgttgctc |
113 |
Q |
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|||| ||| |||||||| |||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||||||| | | |||||| ||||| ||||| |
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| T |
32421876 |
gagaagaagcccaaaactaagatcgtttgcacgctgggacccgcatctaggtctgttcccatggtcgagaagcttttgcgagcaggtatgaacgttgcca |
32421777 |
T |
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| Q |
114 |
gtttcaacttctctcatggttcctatgaatatcatcaggaaacgcttgataatcttagaaccgctatgcaaaataccggtattctctgcgccgtcatgct |
213 |
Q |
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| T |
32421776 |
gattcaacttctctcatggttctcatgactatcatcaggaaactcttgataatcttagagctgctatggagaataccggaattctctgcgccgtcatgct |
32421677 |
T |
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| Q |
214 |
tgacactaaggtattaaac |
232 |
Q |
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||| ||||||||||||||| |
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| T |
32421676 |
tgatactaaggtattaaac |
32421658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 281 - 355
Target Start/End: Complemental strand, 32427438 - 32427364
Alignment:
| Q |
281 |
gataggatggtatagaatttgcatcttacgtgtgattaatgcgtgatttaatgtgcatttgatcgtttacatgta |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32427438 |
gataggatggtatagaatttgcatcttacgtgtgattaatgcgtgatttaatgtgcatttgatcgtttacatgta |
32427364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 40599081 - 40598863
Alignment:
| Q |
14 |
gagatgaaacccaaaacaaagatcgtgtgcacgctgggacctgcatcgaggtctgttccaatggtggagaagcttctacaagcaggcatgaatgttgctc |
113 |
Q |
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| T |
40599081 |
gagaagaaaccgaaaactaagatcgtttgcacgctgggacccgcatctaggtctattcccatggtcgagaagcttttgcgagcaggtatgaacgttgcca |
40598982 |
T |
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| Q |
114 |
gtttcaacttctctcatggttcctatgaatatcatcaggaaacgcttgataatcttagaaccgctatgcaaaataccggtattctctgcgccgtcatgct |
213 |
Q |
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| T |
40598981 |
gattcaacttctctcacggttctcatgactatcatcaggaaactcttgataatcttagagccgccatggagaatactggtattctttgcgccgtcatgct |
40598882 |
T |
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| Q |
214 |
tgacactaaggtattaaac |
232 |
Q |
| |
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||| |||||||||| |||| |
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| T |
40598881 |
tgatactaaggtataaaac |
40598863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 69835 - 69980
Alignment:
| Q |
80 |
gagaagcttctacaagcaggcatgaatgttgctcgtttcaacttctctcatggttcctatgaatatcatcaggaaacgcttgataatcttagaaccgcta |
179 |
Q |
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||||||||||| |||| || |||||||||||||||||||| ||||| |||||| | || |||||||||||||||| ||||||||||| | | |||| |
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| T |
69835 |
gagaagcttcttaaagctggtatgaatgttgctcgtttcaatttctcacatggtactcatcaatatcatcaggaaacccttgataatctcaagtctgcta |
69934 |
T |
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| Q |
180 |
tgcaaaataccggtattctctgcgccgtcatgcttgacactaaggt |
225 |
Q |
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| T |
69935 |
tgcactctactggtattctctgcgctgtcatgctcgacaccaaggt |
69980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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