View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14152_high_27 (Length: 374)
Name: NF14152_high_27
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_high_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 2360205 - 2360453
Alignment:
| Q |
9 |
aaaatggccaatatatacagatatgtttacatactctgaaggcatactgtcgactgaaatgaatgctagaaaatattgcttccattttggtgagaatatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2360205 |
aaaatggccaatatatacagatatgtttacatactctgaaagcatactgtccactgaattgaatgctagaaaatattgcttccattttggtgagaatatt |
2360304 |
T |
|
| Q |
109 |
ggcatacttacatagttagtagtactaaattagaattcaaatgaatcaccttaattaagaggaaatgaaaactatttaagtttatcagtattgcagggat |
208 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2360305 |
ggaatatttacatagttagtagtactaaattagaattcaaatgaatcaccttaattaagaggaaatgaaaactatttaagtttatcagtattgcagggat |
2360404 |
T |
|
| Q |
209 |
tttaaattgaatgcatgcatcttaaaatgaagacttattggacataagg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2360405 |
tttaaattgaatgcatgcatcttaaaatgaaaacttattggacataagg |
2360453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 374
Target Start/End: Original strand, 2360529 - 2360570
Alignment:
| Q |
333 |
gttacaatcgttcaaaccttcaaggaccaagcatgaagcaac |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2360529 |
gttacaatcgttcaaaccttcaaggaccaagcatgaagcaac |
2360570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University