View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_high_3 (Length: 627)
Name: NF14152_high_3
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 1 - 609
Target Start/End: Complemental strand, 7128573 - 7127965
Alignment:
| Q |
1 |
ttttcatgttaccagacaagtacaacatcaagaaaacaggaagtcaatccttatgtaaactttacaaatttagagagaatataattcatatcaaacagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| |
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| T |
7128573 |
ttttcatgttaccagacaagtacaacatcaagaaaacaggaagtcaatccttatgtaaactttaaaaaattagagagaatataatgcatatcaaacagaa |
7128474 |
T |
|
| Q |
101 |
aatcatagccattgtagcactgaaaattgatcgaatgtgtgtcgtgtcccacttgcatcaatgtttaataccgacacgacactgacgcatgtgataacat |
200 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7128473 |
aatcatagcctttgtagcactgataattgatcgaatgtgtgtcgtgtcccacttgcatcattgtttaataccgacacgacactgacgcatgtgataacat |
7128374 |
T |
|
| Q |
201 |
ttaatttatgtcattttgtttgacttcttattatgacagttagggatagttatcatgtcagttgtgattatgggatatttaccgagtggcggctatgaga |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7128373 |
ttaatttatgtcattttgcttgacttcttattatgacagttagggatagttatcatgtcagttgtgattatgggatatttaccgagtggcggctatgaga |
7128274 |
T |
|
| Q |
301 |
gggagagaccaagctctagaattattgcaagggacagatcaagactattgaatttcttgactagtgtgtgtaaatgtttagaccatctctttcttggata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7128273 |
gggagagaccaagctctagaattattgcaagggacagatcaagactattgaatttcttgactagcgtgtgtaaatgtttagaccatctctttcttggata |
7128174 |
T |
|
| Q |
401 |
acaacagactatcttaaaagtgaggcagataggaagcaaacaagatccaacggaagagatagacttttattagcaacaattccgtagattaaagtgatca |
500 |
Q |
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| T |
7128173 |
acaacagactatcttaaaagtgaggcagataggaagcaaacaagatccaacggaagagatagacttttattagcaacaattccgtagattaaagtgatca |
7128074 |
T |
|
| Q |
501 |
gagagagagaaaaatgtacacgctctagggccgttttgagagccgccatgctccctcaaaactcagacttctttcacaccattctatttccctattttct |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7128073 |
gagagagagaaaaatgtacacgctctagggccgttttgagagccgccaagctccctcaaaactcagacttctttcacaccattctatttccctattttct |
7127974 |
T |
|
| Q |
601 |
gtaatcttt |
609 |
Q |
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| T |
7127973 |
gtaatcttt |
7127965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 13218802 - 13218744
Alignment:
| Q |
301 |
gggagagaccaagctctagaattattgcaagggacagatcaagactattgaatttcttg |
359 |
Q |
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| T |
13218802 |
gggagagaccaagctctcgaattcttgcaagggagagacccaaactcttgaatttcttg |
13218744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 27869374 - 27869435
Alignment:
| Q |
300 |
agggagagaccaagctctagaattattgcaagggacagat-caagactattgaatttcttga |
360 |
Q |
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|||||||||||||||||| ||||| ||| |||||| |||| ||||||| | ||||||||||| |
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| T |
27869374 |
agggagagaccaagctcttgaattcttggaagggagagatgcaagactctcgaatttcttga |
27869435 |
T |
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