View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_high_4 (Length: 561)
Name: NF14152_high_4
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 1e-98; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 36516362 - 36516569
Alignment:
| Q |
1 |
aacatatagctaggttgtgcacaaaatcaaaatcacatgtatgtgggaaagaagnnnnnnngacaattattggacaaagtattcatctattatatataca |
100 |
Q |
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| T |
36516362 |
aacatatagctaggttgtgcacaaaatcaaaatcacatgtatgtgggaaagaagaaaaaaagacaattattggacaaagtattcatctattatatataca |
36516461 |
T |
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| Q |
101 |
ccttgtatgatgaaaggttagatcctgaatgtttcttttgaaccctttgataattcaatgagtaatggggtgtggatgaatacatcttggatacccattt |
200 |
Q |
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| T |
36516462 |
ccttgtatgatgaaagggtagatcctgaatgtttcttttgaaccctttgataattcaatgagtaatggggtgtggatgaatacatcttggatacccattt |
36516561 |
T |
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| Q |
201 |
tgcaccat |
208 |
Q |
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|||||||| |
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| T |
36516562 |
tgcaccat |
36516569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 256 - 430
Target Start/End: Original strand, 36516617 - 36516792
Alignment:
| Q |
256 |
gtaactagacttaagtgtattttgttgaagtgccacattctctcaaaactcaaaacaaactttgattcattgcatatctctcgtctaatcctttgacgga |
355 |
Q |
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| T |
36516617 |
gtaactagacttaagtgtattttgttgaagtgccacattctctcaaaactcaaaacaaactttgattcattgcatatctctcgtctaatcctttgacgga |
36516716 |
T |
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| Q |
356 |
g-nnnnnnnnnggaaaaaataatgcatgctgtgaatgctcctattatctccccacgtggctagtataatatataga |
430 |
Q |
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| T |
36516717 |
gttttttttttggaaaaaataatgcatgctgtgaatgctcctattatctccccacgtggctagtataatatataga |
36516792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 36804782 - 36804662
Alignment:
| Q |
88 |
tattatatatacaccttgtatgatgaaaggttagatcctgaatgtttcttttgaaccctttgataattcaatgagtaatggggtgtggatgaatacatct |
187 |
Q |
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| T |
36804782 |
tattatatatacaccttgtatgatgaaagggtagatcctgaatgtttcttttgaatcctttggaaattcaatgagtaatggggtgtggatacatacatct |
36804683 |
T |
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| Q |
188 |
tggatacccattttgcaccat |
208 |
Q |
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| T |
36804682 |
tggatacccattttgcaccat |
36804662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 492 - 545
Target Start/End: Original strand, 36516854 - 36516907
Alignment:
| Q |
492 |
gtgatattgacttgaccctgctgtaaatcttgggtccatcccgtctgacgcaat |
545 |
Q |
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| T |
36516854 |
gtgatattgacttgaccctgctgtaaatcttgggtccatcccgtctgacgcaat |
36516907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 430
Target Start/End: Complemental strand, 36804614 - 36804440
Alignment:
| Q |
256 |
gtaactagacttaagtgtattttgttgaagtgccacattctctcaaaactcaaaacaaactttgattcattg-catatctctcgtctaatcctttgacgg |
354 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||| | |||||||||| ||||||||||||||| |||||||||||||| | ||||||||| |
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| T |
36804614 |
gtaactagactcgagtgtattttgttgaagtgccacat--tcttagaactcaaaaccaactttgattcattgccatatctctcgtctcgttctttgacgg |
36804517 |
T |
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| Q |
355 |
ag-nnnnnnnnngga-aaaaataatgcatgctgtgaatgctcctattatctccccacgtggctagtataatatataga |
430 |
Q |
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| T |
36804516 |
agttttttttgtggataataataatgcatgctgtgaatgctcctatt-ttttcccacgtggctagcaaaaaatataga |
36804440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 36538670 - 36538777
Alignment:
| Q |
7 |
tagctaggttgtgcacaaaa-tcaaaatcacatgtatgtgggaaagaagnnnnnnngacaattattggacaaagtattcatctattatatatacaccttg |
105 |
Q |
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| T |
36538670 |
tagctaggttgtgtacaaaaatcaaaatcacatgtatgtgggaaaaaag--aagaagaaaattattggacaacgtattcattcatgttatatacaccttg |
36538767 |
T |
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| Q |
106 |
tatgatgaaa |
115 |
Q |
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| T |
36538768 |
tatgatgaaa |
36538777 |
T |
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