View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_high_45 (Length: 260)
Name: NF14152_high_45
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 37 - 209
Target Start/End: Complemental strand, 2204695 - 2204523
Alignment:
| Q |
37 |
ttcttttattactttaccccaaaactttcaaaatttataaaaattaagaaatttaattcttctatccaaacatacaattataaatgaaggaaattcggtt |
136 |
Q |
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| T |
2204695 |
ttcttttattactttaccccaaaactttcaaaatttataaaaattaagaaattgaattcttctatccaaacatacaattataaatgaaggaaattcagtt |
2204596 |
T |
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| Q |
137 |
gaaacatttaactgcttagaatttttcatatttctctaaaatttccattagctcatccacacacaccataaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2204595 |
gaaacatttaactgcttagaatttttcatatttctctaaaatttccattagcacatccacacacaccataaat |
2204523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 2204499 - 2204464
Alignment:
| Q |
207 |
aatagaatgcatttgatgtgaccaacaatccacaca |
242 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2204499 |
aatagaatgcatttgatgtgaccaacaatccacaca |
2204464 |
T |
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