View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14152_high_48 (Length: 253)

Name: NF14152_high_48
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14152_high_48
NF14152_high_48
[»] chr8 (1 HSPs)
chr8 (1-235)||(23190881-23191115)
[»] chr7 (1 HSPs)
chr7 (43-211)||(37164067-37164236)
[»] chr6 (2 HSPs)
chr6 (41-151)||(19309084-19309195)
chr6 (41-151)||(10125291-10125402)
[»] chr2 (3 HSPs)
chr2 (41-151)||(38254208-38254319)
chr2 (41-151)||(43155223-43155334)
chr2 (44-169)||(39649275-39649402)
[»] chr1 (1 HSPs)
chr1 (41-151)||(11472547-11472658)
[»] chr5 (2 HSPs)
chr5 (73-211)||(17514249-17514388)
chr5 (41-151)||(25380645-25380756)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 23191115 - 23190881
Alignment:
Q  1 tattttcatcataccaaaaagcacttggggtttgttcgtgtacatccatctcatatgcatgaaagagagacagattctccacaattgttgttgaaaatat 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23191115 tattttcatcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatgaaagagagacagattctccacaattgttgttgaaaatat 23191016  T
Q  101 tatgaaatgcatccaacctcatcgtacaccatacttctttttcttcttgcattagtgtagttttatacacccgttcatgtaaatccgacattagctttat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23191015 tatgaaatgcatccaacctcatcgtacaccatacttctttttcttcttgcattagtgtagttttttacacccgttcatgtaaatccgacattagctttat 23190916  T
Q  201 accctgcatgttgtgccttctggcaccgtcatcgt 235  Q
    |||||||||||||||||||||||||||||||||||    
T  23190915 accctgcatgttgtgccttctggcaccgtcatcgt 23190881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 37164236 - 37164067
Alignment:
Q  43 catccatctcatatgcatgaaagagagacagattctcca-caattgttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttt 141  Q
    ||||||||| ||||||||||||||  ||  ||||||||| ||||||| |||||||||||| |||||  ||||||| |||| | ||| |||||||||||||    
T  37164236 catccatctgatatgcatgaaagaaggatggattctccaacaattgtcgttgaaaatattgtgaaagacatccaatctcaccatacgccatacttctttt 37164137  T
Q  142 tcttcttgcattagtgtagttttatacacccgttcatgtaaatccgacattagctttataccctgcatgt 211  Q
    |||| ||||| |  ||||||||  |||| || |   ||||||||| ||||||||| ||| ||||||||||    
T  37164136 tctttttgcaatgatgtagtttcttacatccttctctgtaaatcctacattagctctatgccctgcatgt 37164067  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 19309084 - 19309195
Alignment:
Q  41 tacatccatctcatatgcatgaaagagagacagattctcca-caattgttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctt 139  Q
    ||||||||||| ||||||||||||||  ||  ||||||||| ||||||| |||||||||||| |||||  ||||||| |||| | ||  |||||||||||    
T  19309084 tacatccatctgatatgcatgaaagaaggatggattctccaacaattgtcgttgaaaatattttgaaagacatccaatctcaccatatgccatacttctt 19309183  T
Q  140 tttcttcttgca 151  Q
    ||||||||||||    
T  19309184 tttcttcttgca 19309195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 10125291 - 10125402
Alignment:
Q  41 tacatccatctcatatgcatgaaagagagacagattctcca-caattgttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctt 139  Q
    ||||||||||| ||||||||||||||  ||  ||||||||| ||||||| ||||||| |||| |||||  ||||||| |||| | ||  |||||||||||    
T  10125291 tacatccatctgatatgcatgaaagaaggatggattctccaacaattgtcgttgaaattattgtgaaagacatccaatctcaccatatgccatacttctt 10125390  T
Q  140 tttcttcttgca 151  Q
    ||||||||||||    
T  10125391 tttcttcttgca 10125402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 38254208 - 38254319
Alignment:
Q  41 tacatccatctcatatgcatgaaagagagacagattctcca-caattgttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctt 139  Q
    ||||||||||| ||||||||||||||  ||  ||||||||| ||||||| |||||||||||| |||||  ||||||| |||| | ||  |||||||||||    
T  38254208 tacatccatctgatatgcatgaaagaaggatggattctccaacaattgtcgttgaaaatattttgaaagacatccaatctcaccatatgccatacttctt 38254307  T
Q  140 tttcttcttgca 151  Q
    ||||||||||||    
T  38254308 tttcttcttgca 38254319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 43155334 - 43155223
Alignment:
Q  41 tacatccatctcatatgcatgaaagagagacagattctcca-caattgttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctt 139  Q
    ||||||||||| ||||||||||||||  ||  ||||||||| ||||||| |||||||||||| |||||  ||||||| |||| | ||  |||||||||||    
T  43155334 tacatccatctgatatgcatgaaagaaggatggattctccaacaattgtcgttgaaaatattttgaaagacatccaatctcaccatatgccatacttctt 43155235  T
Q  140 tttcttcttgca 151  Q
    ||||||||||||    
T  43155234 tttcttcttgca 43155223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 39649402 - 39649275
Alignment:
Q  44 atccatctcatatgcatgaaagagagacagattctcca-caattgttgttgaaaatattatgaaatgcatccaacctcatc-gtacaccatacttctttt 141  Q
    |||||||| ||||||||||||||  ||   |||||||| | | | |||||||||||||| |||||  |||||||| ||| | |||||||||||||||||     
T  39649402 atccatctgatatgcatgaaagaaggatgtattctccaacgactattgttgaaaatattttgaaagacatccaacatcacccgtacaccatacttctttg 39649303  T
Q  142 tcttcttgcattagtgtagttttataca 169  Q
    |||| ||||| |  ||||||||| ||||    
T  39649302 tctttttgcagtgatgtagttttttaca 39649275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 11472658 - 11472547
Alignment:
Q  41 tacatccatctcatatgcatgaaagagagacagattctcca-caattgttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctt 139  Q
    ||||||||||| ||||||||||||||  ||  ||||||||| ||||||| |||||||||||| |||||  ||||||| |||| | ||  |||||||||||    
T  11472658 tacatccatctgatatgcatgaaagaaggatggattctccaacaattgtcgttgaaaatattttgaaagacatccaatctcaccatatgccatacttctt 11472559  T
Q  140 tttcttcttgca 151  Q
    ||||||||||||    
T  11472558 tttcttcttgca 11472547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 17514249 - 17514388
Alignment:
Q  73 gattctcca-caattgttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttttcttcttgcattagtgtagttttatacacc 171  Q
    ||||||||| ||||||| |||||||||||| |||||  ||||||| |||| | ||| ||||||||||||||||| |||||    ||||||||  |||| |    
T  17514249 gattctccaacaattgtcgttgaaaatattgtgaaagacatccaatctcaccatacgccatacttctttttctttttgcaaggatgtagtttcttacatc 17514348  T
Q  172 cgttcatgtaaatccgacattagctttataccctgcatgt 211  Q
    | |   ||||||||| ||||||||| ||| ||||||||||    
T  17514349 cttctttgtaaatcctacattagctctatgccctgcatgt 17514388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 25380756 - 25380645
Alignment:
Q  41 tacatccatctcatatgcatgaaagagagacagattctcca-caattgttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctt 139  Q
    |||||| |||| ||||||||||||||  ||  ||||||||| ||||||| ||||||||||||||||||  ||||||| |||| | ||  ||||| |  ||    
T  25380756 tacatctatctgatatgcatgaaagaaggatggattctccaacaattgtcgttgaaaatattatgaaagacatccaatctcaccatatgccataatattt 25380657  T
Q  140 tttcttcttgca 151  Q
    ||||||||||||    
T  25380656 tttcttcttgca 25380645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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