View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_high_58 (Length: 213)
Name: NF14152_high_58
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_high_58 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 46402148 - 46402328
Alignment:
| Q |
19 |
tgcacaagattatctatgcccgtgcctacacttatgagcatcagtataaccttctccttggtttggctgctaaaatggctgaagaaccattcagacttct |
118 |
Q |
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| T |
46402148 |
tgcacaagattatctatgcccgtgcctacacttatgagcatcagtataaccttctccttggtttggctgctaaaatggctgaagaaccattcagacttct |
46402247 |
T |
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| Q |
119 |
ggtgagatgttactcatagagtggtatagagtttccttccgttgcaatatcatttgatgtggaaagttgactgaatatatt |
199 |
Q |
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| T |
46402248 |
ggtgagatgttactcatagagtggtatagagtttccttccgttgcaatatcatttgatgtggaaagttgactgaatatatt |
46402328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 17113787 - 17113687
Alignment:
| Q |
34 |
atgcccgtgcctacacttatgagcatcagtataaccttctccttggtttggctgctaaa--atggctgaagaaccattcagacttctggtgagatgttac |
131 |
Q |
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| T |
17113787 |
atgctcgtgcctaaacttatgagcatcaatataaccttctccttggtttgggtgctatataatgtttaaagaaccattcagatttctggtgagatattac |
17113688 |
T |
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| Q |
132 |
t |
132 |
Q |
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| T |
17113687 |
t |
17113687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 39950783 - 39950965
Alignment:
| Q |
18 |
atgcacaagatt-atctatgcccgtgcctacacttatgagcatcagtataaccttctccttggtttggctgctaaaatggctgaagaaccattcagactt |
116 |
Q |
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| T |
39950783 |
atgcacaagatttatctatgctcgtgcctacacttatgaacatcagcataaccttcttcttggtttggctgctaaaatggctgaagaaccattcagactt |
39950882 |
T |
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| Q |
117 |
ctggtgagatgttactcatagagtggtatagagtttccttccgttgcaatatcatttgatgtggaaagttgactgaatatatt |
199 |
Q |
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| T |
39950883 |
ctggtgagatgttactcatagagtagtatagagttgccttccgttgcaatatcgtgtgatgtggggagttgattgaatatatt |
39950965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 27743676 - 27743510
Alignment:
| Q |
19 |
tgcacaagattatctatgcccg-tgcctacacttatgagcatcagtata----accttctccttggtttggctgctaaaatggctgaagaaccattcaga |
113 |
Q |
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| T |
27743676 |
tgcacaagagcatctatgctcggtgcctacacttatgagcagcagtatatataaccttctccttggtttggctgctaaaatgtctgaagaaccattcata |
27743577 |
T |
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| Q |
114 |
cttctggtgagatgttactcatagagtggtatagagtttccttccgttgcaatatcatttgatgtgg |
180 |
Q |
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| T |
27743576 |
cttctggtgagatgttactgatcgagtagaatagagttatcttctgttgcaatatcaagtgatgtgg |
27743510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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