View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_high_8 (Length: 520)
Name: NF14152_high_8
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 183 - 501
Target Start/End: Complemental strand, 26054064 - 26053746
Alignment:
| Q |
183 |
aaactacaaataccgctaaaaaataggttgaaattaagtatgtcactggtgtatccctaatgtatcacaccattggactaacaagtaaattaaaggacga |
282 |
Q |
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||||||||| ||| |||||||||||||||||||||||| | |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26054064 |
aaactacaagtacagctaaaaaataggttgaaattaagcaagtcactggtgtacccctaatatatcacaccattggactaacaagtaaattaaaggacga |
26053965 |
T |
|
| Q |
283 |
gatttgttggaaatnnnnnnnnnngttacatttatgtcttctccatccaatccttactctttattttagggttctttttaccattcccatcatcttcttc |
382 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26053964 |
gatttgttggaaataaaaaaaaaagtaacatttatgtcttctccatccaatccttactctttatattagggttctttttaccattcccatcatcttcttc |
26053865 |
T |
|
| Q |
383 |
ttcttccaaatgcaaaataaaggaaattgccggtggttcttnnnnnnnttcttttcatttttcgagattcgtggttgtctttcaagatttccttatatct |
482 |
Q |
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|||||||||| ||||||||||| |||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26053864 |
ttcttccaaacgcaaaataaagaaaattgtcggtggttcttaaaaaaattctttccatttttcgagattcgtggttgtctttcaagatttccttttatct |
26053765 |
T |
|
| Q |
483 |
taattctggatttcttgtc |
501 |
Q |
| |
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||||||||||||||||||| |
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| T |
26053764 |
taattctggatttcttgtc |
26053746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 183 - 501
Target Start/End: Complemental strand, 26074117 - 26073799
Alignment:
| Q |
183 |
aaactacaaataccgctaaaaaataggttgaaattaagtatgtcactggtgtatccctaatgtatcacaccattggactaacaagtaaattaaaggacga |
282 |
Q |
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||||||||| ||| |||||||||||||||||||||||| | |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26074117 |
aaactacaagtacagctaaaaaataggttgaaattaagcaagtcactggtgtacccctaatatatcacaccattggactaacaagtaaattaaaggacga |
26074018 |
T |
|
| Q |
283 |
gatttgttggaaatnnnnnnnnnngttacatttatgtcttctccatccaatccttactctttattttagggttctttttaccattcccatcatcttcttc |
382 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26074017 |
gatttgttggaaataaaaaaaaaagtaacatttatgtcttctccatccaatccttactctttatattagggttctttttaccattcccatcatcttcttc |
26073918 |
T |
|
| Q |
383 |
ttcttccaaatgcaaaataaaggaaattgccggtggttcttnnnnnnnttcttttcatttttcgagattcgtggttgtctttcaagatttccttatatct |
482 |
Q |
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|||||||||| ||||||||||| |||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26073917 |
ttcttccaaacgcaaaataaagaaaattgtcggtggttcttaaaaaaattctttccatttttcgagattcgtggttgtctttcaagatttccttttatct |
26073818 |
T |
|
| Q |
483 |
taattctggatttcttgtc |
501 |
Q |
| |
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||||||||||||||||||| |
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| T |
26073817 |
taattctggatttcttgtc |
26073799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 25519826 - 25519678
Alignment:
| Q |
19 |
atggtgaaaacctaatttataaatctaaacagcggcgacgagggtagtcattatatatttccatactatctctattatgaatatgttctaattttgaatt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25519826 |
atggtgaaaacctaatttataaatctaaacggcggcaacgagggtagtcattatatatttccatactatctatattatgaatatgttctaattttgaatt |
25519727 |
T |
|
| Q |
119 |
tattgatccatgactaacacttaaaatccaacacattttcacataatta |
167 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25519726 |
tactgatccatgactaacacttaaaatccaacacatattcacataatta |
25519678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 25528537 - 25528505
Alignment:
| Q |
81 |
atactatctctattatgaatatgttctaatttt |
113 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
25528537 |
atactatctctattatgaatatgttctaatttt |
25528505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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