View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_high_9 (Length: 515)
Name: NF14152_high_9
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 17 - 503
Target Start/End: Original strand, 44627683 - 44628169
Alignment:
| Q |
17 |
agaagttgacagtgacgacgaagaagagatgaacttggttatcaaagatcttttcaagcttctaaagaaaaacaagaagtccttcaagcaaggagagaag |
116 |
Q |
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| T |
44627683 |
agaagttgacagtgatgaagaagaagagatgaacttggttatcaaagatcttttcaagcttctaaagaaaaacaagaagtccttcaagcaaggagagaag |
44627782 |
T |
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| Q |
117 |
gaacgccagaagagaggatcctcttctacacgtgcaatgccctgattcaaaaactactctttgtaagtgccttttttaacttgttctacacctgaaactt |
216 |
Q |
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| T |
44627783 |
gagcgccggaagagaggatcctcttctacacgtgcaacgccctgattcaaaaactactctttgtaagtgccttttttaacttgttctacacctgaaactt |
44627882 |
T |
|
| Q |
217 |
cacatacatgagtttgaagaggaaatgaaaattcatcatgtcattgtatttgttgtttactaagtagctatgttggatttagtttattaatcaaacttta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44627883 |
cacatacatgagtttgaagaggaaatgaaaattcatcatgtcattgtatttgttgtttactaagtagctatgttggattgagtttattaatcaaacttta |
44627982 |
T |
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| Q |
317 |
aaatgtaaatgatcgagttactaactattgaatatgtttactttgaagttgtaaaaaattttacattgttctgtttcctattaaattttaaattactatt |
416 |
Q |
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| T |
44627983 |
aaatgtaaatgattgagttactaactattgaatatgtttactttgaagttgtaaaattttgtacattgttctgtttcctattaaattttaaattactatt |
44628082 |
T |
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| Q |
417 |
tcatctatggtttatataatatatgatatgatttttgcttgtaggatgatctcttcttggaattaaataattgatcgagttatgatg |
503 |
Q |
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| T |
44628083 |
tcatctatggtttatataatatatgatatgatttttgcttgtaggatgatctcttcttggaattaaataattgatcgagttatgatg |
44628169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 26080812 - 26080955
Alignment:
| Q |
25 |
acagtgacgacgaagaagagatgaacttggttatcaaagatcttttcaagcttctaaagaaaaacaagaagtccttcaagcaaggagagaaggaacgcca |
124 |
Q |
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||||||||||| |||||| ||||||||||| | ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
26080812 |
acagtgacgactctgaagaggtgaacttggttttgaaagacctttccaagcttctaaagaaaaacaagaagtccttcaagcaaggagagaaagaacacag |
26080911 |
T |
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| Q |
125 |
gaagagaggatcctcttctacacgtgcaatgccctgattcaaaa |
168 |
Q |
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| T |
26080912 |
ggagaaaggatcctcttctacgcgtacaatgttctgattcaaaa |
26080955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 2850876 - 2850786
Alignment:
| Q |
159 |
tgattcaaaaactactctttgtaagtgccttttttaacttgttctacacctgaaacttcacatacatgagtttgaagaggaaatgaaaatt |
249 |
Q |
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||||||||||| ||||| ||||||||| |||| |||||||||||||| ||||||||||||| ||| | |||||||| ||||||||||| |
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| T |
2850876 |
tgattcaaaaagtactccttgtaagtgttttttctaacttgttctacagctgaaacttcacacacaggcacttgaagagaaaatgaaaatt |
2850786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 2902908 - 2902818
Alignment:
| Q |
159 |
tgattcaaaaactactctttgtaagtgccttttttaacttgttctacacctgaaacttcacatacatgagtttgaagaggaaatgaaaatt |
249 |
Q |
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||||||||||| ||||| ||||||||| |||| |||||||||||||| ||||||||||||| ||| | |||||||| ||||||||||| |
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| T |
2902908 |
tgattcaaaaagtactccttgtaagtgttttttctaacttgttctacagctgaaacttcacacacaggcacttgaagagaaaatgaaaatt |
2902818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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