View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14152_low_1 (Length: 744)
Name: NF14152_low_1
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 694; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 18 - 735
Target Start/End: Complemental strand, 41713778 - 41713061
Alignment:
| Q |
18 |
acatggaacccggcgattgtattatcgacggaggtaacgaatggtatgaaaataccgaacgaagaatccaacaaatctctgaaaagggaatactctatct |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41713778 |
acatggagcccggcgattgtattatcgacggtggtaacgaatggtatgaaaataccgaacgaagaatccaacaaatctctgaaaagggaatactctatct |
41713679 |
T |
|
| Q |
118 |
cggtatgggtgtttctggtggtgaagaaggtgctagaaatggaccttctcttatgcctggtggctcctaccaggcttatagtaatattcaagatattctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41713678 |
cggtatgggtgtttctggtggtgaagaaggtgctagaaatggaccttctcttatgcctggtggctcctaccaggcttatagtaatattcaagatattctt |
41713579 |
T |
|
| Q |
218 |
accaaggttgctgctcaggttgaagatggtccttgtgttacttacattggtgaaggtggttctggtaattttgttaagatggttcataatggtattgaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41713578 |
accaaggttgctgctcaggttgaagatggtccttgtgttacttacattggtgaaggtggttctggtaattttgttaagatggttcataatggtattgaat |
41713479 |
T |
|
| Q |
318 |
atggtgacatgcagcttatttctgaagcttatgatgttttgaagcatgttggtggattgtccaattctgaacttgctgatatttttgctgagtggaataa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41713478 |
atggtgacatgcagcttatttctgaagcttatgatgttttgaagcatgttggtggattgtccaattctgaacttgctgatatttttgctgagtggaatag |
41713379 |
T |
|
| Q |
418 |
tggtgagcttgagagttttcttattgagattactgctgatatttttaaggtgaaggatgaaggtggggatgggtatttggtggataagattttggataag |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41713378 |
tggtgagcttgagagttttcttattgagattactgctgatatttttaaggtgaaggatgaaggtggggatgggtatttggtggataagattttggataag |
41713279 |
T |
|
| Q |
518 |
actggtatgaaggggactggtaaatggactgttcaacaagctgcggagttgtcagttgctgctccgactattgctgcttcgttggactgtaggtatttga |
617 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41713278 |
actggtatgaaggggaccggtaaatggactgttcaacaagctgcggagttgtcagttgctgctccgactattgctgcttcgttggactgtaggtatttga |
41713179 |
T |
|
| Q |
618 |
gtgggttgaaggaggagagggagaatgccgcggcagttttgaaggaagcgggattgggtgaggaagtgggagggtttgtgagaagtggggttgataagaa |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41713178 |
gtgggttgaaggaggagagggagaatgccgcggcagttttgaaggaagcggggttgggcgaggaagtgggagggtttgtgagaagtggggttgataagaa |
41713079 |
T |
|
| Q |
718 |
aaggttgattgatgatgt |
735 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
41713078 |
aaggttgattgatgatgt |
41713061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 248 - 361
Target Start/End: Original strand, 5751753 - 5751866
Alignment:
| Q |
248 |
ccttgtgttacttacattggtgaaggtggttctggtaattttgttaagatggttcataatggtattgaatatggtgacatgcagcttatttctgaagctt |
347 |
Q |
| |
|
|||||||| || || || ||| ||||||| |||||||||||||| |||||| | |||||||| ||||||||||||||||||||||| ||| |||| |||| |
|
|
| T |
5751753 |
ccttgtgtgacatatatcggtaaaggtggatctggtaattttgtgaagatgatccataatggaattgaatatggtgacatgcagctgattgctgaggctt |
5751852 |
T |
|
| Q |
348 |
atgatgttttgaag |
361 |
Q |
| |
|
| ||||| |||||| |
|
|
| T |
5751853 |
acgatgtgttgaag |
5751866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 603
Target Start/End: Original strand, 5752023 - 5752108
Alignment:
| Q |
518 |
actggtatgaaggggactggtaaatggactgttcaacaagctgcggagttgtcagttgctgctccgactattgctgcttcgttgga |
603 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||| ||||| || || || |||||| ||||||| || |||| ||||| ||||| |
|
|
| T |
5752023 |
actggtatgaagggtaccggtaagtggactgttcagcaagcagctgaattatcagttcctgctcccaccattgaagcttcattgga |
5752108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University