View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14152_low_12 (Length: 487)
Name: NF14152_low_12
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_12 |
 | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
| [»] scaffold0558 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 8925371 - 8925168
Alignment:
| Q |
30 |
tttattataaattctaaaagctttactggaagtggaatatcctagaaaaatacct-tcatcagctttagcatcaaacttgcaaaggttatctttacca-- |
126 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| |||||||||||||||||| ||| |||||||||||| |
|
|
| T |
8925371 |
tttattataaattctaaaagctttactagaagtggaatatcttagaaaaataatgatcatcatctttagcatcaaacttgccaagattatctttaccaca |
8925272 |
T |
|
| Q |
127 |
ttattcaaaacaaagcatttacatccgaaaacgtgaaaatgggatatatttggcttccttcccttgtaaatttcatagggtgtttgttttagaatgggtc |
226 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8925271 |
ttatttaaaacaaaacatttacatccaaaaacgtgaaaatgggatatattgggctttcttcccttgtaaatttcatagggtgtttgttttagaataggtc |
8925172 |
T |
|
| Q |
227 |
ttat |
230 |
Q |
| |
|
|||| |
|
|
| T |
8925171 |
ttat |
8925168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 20578209 - 20578249
Alignment:
| Q |
337 |
ctatttttcctttccactaccccattttgttgtggagttct |
377 |
Q |
| |
|
|||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
20578209 |
ctatttttcctttcaacaacaccattttgttgtggagttct |
20578249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 62068 - 62147
Alignment:
| Q |
64 |
gaatatcctagaaaaataccttcatcagctttagcatcaaacttgcaaaggttatctttaccattattcaaaacaaagca |
143 |
Q |
| |
|
||||||||||| |||||||| |||||||| || ||||||||||||| || || ||||| ||||| || |||| |||||| |
|
|
| T |
62068 |
gaatatcctaggaaaataccatcatcagcctttgcatcaaacttgcctagtttgtcttttccattgtttaaaataaagca |
62147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 20398228 - 20398319
Alignment:
| Q |
67 |
tatcctagaaaaataccttcatcagctttagcatcaaacttgcaaaggttatctttaccattattcaaaacaaagcatttacatccgaaaac |
158 |
Q |
| |
|
|||||||| ||||| || ||||| | || ||||||||||||| | | || ||||| |||||||| ||||||||||||||||| || ||||| |
|
|
| T |
20398228 |
tatcctaggaaaattccgtcatccacctttgcatcaaacttgccaggtttgtctttcccattatttaaaacaaagcatttacaaccaaaaac |
20398319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 22834654 - 22834612
Alignment:
| Q |
337 |
ctatttttcctttccactaccccattttgttgtggagttcttg |
379 |
Q |
| |
|
|||||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
22834654 |
ctatttttcctttcaacaactccattttgttgtggagttcttg |
22834612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0558 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0558
Description:
Target: scaffold0558; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 2014 - 2099
Alignment:
| Q |
67 |
tatcctagaaaaataccttcatcagctttagcatcaaacttgcaaaggttatctttaccattattcaaaacaaagcatttacatcc |
152 |
Q |
| |
|
||||||| ||||||||| ||||| | || |||| |||||||| ||| |||||||| |||| || |||||||| ||||||||||| |
|
|
| T |
2014 |
tatcctaaaaaaataccatcatcgccatttgcattaaacttgccaagtttatctttttcattgtttaaaacaaaacatttacatcc |
2099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0558; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 5426 - 5511
Alignment:
| Q |
67 |
tatcctagaaaaataccttcatcagctttagcatcaaacttgcaaaggttatctttaccattattcaaaacaaagcatttacatcc |
152 |
Q |
| |
|
||||||| ||||||||| ||||| | || |||| |||||||| ||| |||||||| |||| || |||||||| ||||||||||| |
|
|
| T |
5426 |
tatcctaaaaaaataccatcatcgccatttgcattaaacttgccaagtttatctttttcattgtttaaaacaaaacatttacatcc |
5511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 29563248 - 29563207
Alignment:
| Q |
337 |
ctatttttcctttccactaccccattttgttgtggagttctt |
378 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
29563248 |
ctatttttcctttcaacaactccattttgttgtggagttctt |
29563207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University