View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_13 (Length: 475)
Name: NF14152_low_13
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 462
Target Start/End: Complemental strand, 38892849 - 38892400
Alignment:
| Q |
14 |
cacaaacaaaattttaacgccgtgagtgccgcagtcaaaacttaaaactaaagaacataggttcacnnnnnnnnnnnnnnnnnnnnngtgagtgtgacat |
113 |
Q |
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| T |
38892849 |
cacaaacaaaattttaacgccgtgagtgccgcagtcaaaacttaaaactaaagaacataggttcacttttttactttgcccttttttgtgagtgtgacat |
38892750 |
T |
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| Q |
114 |
atgcctcttgttattttgatccgtatgttttctttcccgatcgatataatgcaatgagcaaaggttcactgttaaatctaatccattataagctaatata |
213 |
Q |
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| T |
38892749 |
aagcctcttgttattttgatccgtatgttttctttcccgatcgatataatgcaatgagcaaaggttcactgttaaatctaatccattataagctaatata |
38892650 |
T |
|
| Q |
214 |
tttatccacacacacgtgtaatgttaaactagcaatgcaaatgtagaacagagaagagagacaagtgaaaagtgagatttcaaattgttggatttaagtt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38892649 |
tttatccacacacacgtgtaatgttaaactagcaatgcaaatgtagaacagagaagagagacaagtgaaaagtgagatttcaaattgttgggattaagtt |
38892550 |
T |
|
| Q |
314 |
tgagtgattagttctacatcaattatgaatagacaaaacgttgaatatatatgagatgtgacatatataca-taatgttttaaggtttttagcgaagata |
412 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| |
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| T |
38892549 |
tgagtgattaattctacatcaattatgaatagacaaaacgttgaatatatatgagatgtgacatatacacattaatgttttaaggttttgagcgaagata |
38892450 |
T |
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| Q |
413 |
tgatgtctccatcgcttataatcataggtaattggtttgttgttgctttc |
462 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
38892449 |
tgatgtctccatcgcttataatcataggtaattggttcgctgttgctttc |
38892400 |
T |
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