View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14152_low_17 (Length: 433)

Name: NF14152_low_17
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14152_low_17
NF14152_low_17
[»] chr3 (2 HSPs)
chr3 (20-429)||(8102678-8103087)
chr3 (38-295)||(40146992-40147249)
[»] chr4 (8 HSPs)
chr4 (298-433)||(7606716-7606851)
chr4 (43-270)||(7637307-7637534)
chr4 (316-433)||(7637565-7637682)
chr4 (46-270)||(7606479-7606703)
chr4 (367-411)||(7629170-7629214)
chr4 (46-98)||(7655961-7656013)
chr4 (298-404)||(7655670-7655776)
chr4 (43-104)||(7628861-7628922)
[»] chr7 (2 HSPs)
chr7 (320-419)||(8935619-8935718)
chr7 (222-270)||(8910814-8910862)
[»] chr8 (1 HSPs)
chr8 (367-419)||(15190702-15190754)


Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 20 - 429
Target Start/End: Original strand, 8102678 - 8103087
Alignment:
Q  20 ttgcaaccatagaagctacaacagcatttccaaaataatcttccggctatggaggaacaaacctttgtctaactcctatcccgaccataaaatatgcgtt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8102678 ttgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatggtggaacaaacctttgtctaactcctatcccgaccataaaatatgcgtt 8102777  T
Q  120 ctcttgtggctctaattggtcggaacggatcactgagcaccaaaggtgtgcaaaaagtgcttgaagggaagatattttgttcgtatccgtttctaagttg 219  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8102778 ctcttgtgggtctaattggtcggaacggatcactgagcaccaaaggtgtgcaaaaagtgcttgaagggaagatattttgttcgtacccgtttctaagttg 8102877  T
Q  220 gctttcaatttcaattgagagattttctcctttgtgaaatgaaataacctaactgatgggttgagtttttcgttatttagtttttcgttattagatgatg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8102878 gctttcaatttcaattgagagattttctcctttgtgaaatgaaataacctaactgatgggttgagtttttcgttatttagtttttcgttattagatgatg 8102977  T
Q  320 aaaaactcaacccaccagattggttattttgtagcttcttagtgaagggaaatcgtatgggacgttgaataccatctggaaaccatcgttcaagtgttgg 419  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||     
T  8102978 aaaaactcaacccatcagattggttattttgtagcttcttagtgaagggaaatcgtatgggacattgaataccatctggaaaccaacgttcaagtgttga 8103077  T
Q  420 gagttcggat 429  Q
    ||||| ||||    
T  8103078 gagtttggat 8103087  T

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Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 38 - 295
Target Start/End: Complemental strand, 40147249 - 40146992
Alignment:
Q  38 caacagcatttccaaaataatcttccggctatggaggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtggctctaattg 137  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||||||  |||| |||||||| |||||||| ||||  | |  || ||||| || |||||    
T  40147249 caacagcatttccaaaataatcttcaggcaatggtggaacaaaccttgatctagctcctatcgcgaccatataataaacttcttcgtgtgggtcaaattg 40147150  T
Q  138 gtcggaacggatcactgagcaccaaaggtgtgcaaaaagtgcttgaagggaagatattttgttcgtatccgtttctaagttggctttcaatttcaattga 237  Q
     | |||||||||||| |||| |||||| |||| |||||||| ||| ||||| ||||||||||| ||| |  | || | ||||||||||||||||| ||||    
T  40147149 tttggaacggatcacagagcgccaaagatgtgtaaaaagtgattggagggatgatattttgttggtaccaatctccatgttggctttcaatttcagttga 40147050  T
Q  238 gagattttctcctttgtgaaatgaaataacctaactgatgggttgagtttttcgttat 295  Q
    | ||||||||||||||||||||| ||||||||  ||||||| ||||  ||||||||||    
T  40147049 gcgattttctcctttgtgaaatggaataacctctctgatggattgaacttttcgttat 40146992  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 298 - 433
Target Start/End: Original strand, 7606716 - 7606851
Alignment:
Q  298 agtttttcgttattagatgatgaaaaactcaacccaccagattggttattttgtagcttcttagtgaagggaaatcgtatgggacgttgaataccatctg 397  Q
    |||||||| | |||||| ||||||||||||||| || || | || ||||||||| ||| | ||||||| ||||||||||||||| |||||||||||| ||    
T  7606716 agtttttcctcattagacgatgaaaaactcaactcatcacagtgattattttgttgctccgtagtgaaaggaaatcgtatgggaagttgaataccatttg 7606815  T
Q  398 gaaaccatcgttcaagtgttgggagttcggatattt 433  Q
    ||||||| || || ||||||||| ||| ||||||||    
T  7606816 gaaaccaacgctctagtgttgggggtttggatattt 7606851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 270
Target Start/End: Original strand, 7637307 - 7637534
Alignment:
Q  43 gcatttccaaaataatcttccggctatggaggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtggctctaattggtcgg 142  Q
    |||||||||||||||||||| ||  | || ||||| |||||| ||| |||||||||| ||||  ||  | || | |  |||||||| || ||||| | |     
T  7637307 gcatttccaaaataatcttctggtaacggtggaactaaccttggtcgaactcctatcacgactctattaaatacttcttcttgtgggtcaaattgtttga 7637406  T
Q  143 aacggatcactgagcaccaaaggtgtgcaaaaagtgcttgaagggaagatattttgttcgtatccgtttctaagttggctttcaatttcaattgagagat 242  Q
    ||||| ||||  ||||||||| ||| |  ||||||||||| || |||||||||||| | ||  |  | |||  ||||  |||| ||||||||||   |||    
T  7637407 aacgggtcacatagcaccaaacgtgagttaaaagtgcttgtagagaagatattttggtggtgccgatctcttcgttgattttcgatttcaattgtaggat 7637506  T
Q  243 tttctcctttgtgaaatgaaataaccta 270  Q
    ||||||||||||||||||||||||||||    
T  7637507 tttctcctttgtgaaatgaaataaccta 7637534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 433
Target Start/End: Original strand, 7637565 - 7637682
Alignment:
Q  316 gatgaaaaactcaacccaccagattggttattttgtagcttcttagtgaagggaaatcgtatgggacgttgaataccatctggaaaccatcgttcaagtg 415  Q
    |||||||||||||||| | |||| || | ||||||| ||| |  |||||| ||||||||||| || ||||||| ||||| ||||||||| || || ||||    
T  7637565 gatgaaaaactcaacctatcagagtgatcattttgttgctccaaagtgaaaggaaatcgtataggccgttgaacaccatttggaaaccaacgctctagtg 7637664  T
Q  416 ttgggagttcggatattt 433  Q
    ||||| |||  |||||||    
T  7637665 ttgggggtttagatattt 7637682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 270
Target Start/End: Original strand, 7606479 - 7606703
Alignment:
Q  46 tttccaaaataatcttccggctatggaggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtggctctaattggtcggaac 145  Q
    ||||||||||||||||| ||  |||| |||||||||||| ||| |||||||||| |||| | |  |||| | |  |||||| | || ||||| | |||||    
T  7606479 tttccaaaataatcttctggtaatggtggaacaaaccttggtccaactcctatcacgactagattatatacttcttcttgtaggtcaaattgtttggaac 7606578  T
Q  146 ggatcactgagcaccaaaggtgtgcaaaaagtgcttgaagggaagatattttgttcgtatccgtttctaagttggctttcaatttcaattgagagatttt 245  Q
    |||  || |||||||||||||| |  ||||| ||||| || |||| ||||||| | ||| |    |||   |||  |||| |||||| |||   ||||||    
T  7606579 ggacgacagagcaccaaaggtgagttaaaagcgcttgtagagaagttattttgatggtaccaacctcttcattgattttcgatttcagttgtatgatttt 7606678  T
Q  246 ctcctttgtgaaatgaaataaccta 270  Q
    |||||||||||||||||||||||||    
T  7606679 ctcctttgtgaaatgaaataaccta 7606703  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 411
Target Start/End: Original strand, 7629170 - 7629214
Alignment:
Q  367 ggaaatcgtatgggacgttgaataccatctggaaaccatcgttca 411  Q
    ||||||||||||||| |||||||||||| ||||||||| ||||||    
T  7629170 ggaaatcgtatgggaagttgaataccatttggaaaccaacgttca 7629214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 7656013 - 7655961
Alignment:
Q  46 tttccaaaataatcttccggctatggaggaacaaacctttgtctaactcctat 98  Q
    ||||||||||||||||||||| |||| |||||||  ||| |||||||||||||    
T  7656013 tttccaaaataatcttccggcaatggtggaacaagtcttggtctaactcctat 7655961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 404
Target Start/End: Complemental strand, 7655776 - 7655670
Alignment:
Q  298 agtttttcgttattagatgatgaaaaactcaacccaccagattggttattttgtagcttcttagtgaagggaaatcgtatgggacgttgaataccatctg 397  Q
    |||||||||| || ||| || |||||||| |||||| |||| || || |||||| |||   |||| || ||||||||||| || |||||||| |||| ||    
T  7655776 agtttttcgtcatcagaagacgaaaaacttaacccatcagagtgattcttttgtggctctatagttaaaggaaatcgtataggtcgttgaattccatttg 7655677  T
Q  398 gaaacca 404  Q
    |||||||    
T  7655676 gaaacca 7655670  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 7628861 - 7628922
Alignment:
Q  43 gcatttccaaaataatcttccggctatggaggaacaaacctttgtctaactcctatcccgac 104  Q
    |||||||||||||||||||| ||  |||| |||| || |||| |||||||||||||| ||||    
T  7628861 gcatttccaaaataatcttctggtaatggtggaataagccttggtctaactcctatcgcgac 7628922  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 419
Target Start/End: Complemental strand, 8935718 - 8935619
Alignment:
Q  320 aaaaactcaacccaccagattggttattttgtagcttcttagtgaagggaaatcgtatgggacgttgaataccatctggaaaccatcgttcaagtgttgg 419  Q
    |||||||||||||| |||| || || |||||| ||| |  |||||| ||||||||||| || ||||||| |||||| |||||||| ||||| ||||||||    
T  8935718 aaaaactcaacccatcagagtgattcttttgttgctccaaagtgaaaggaaatcgtattggccgttgaacaccatccggaaaccaacgttctagtgttgg 8935619  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 8910862 - 8910814
Alignment:
Q  222 tttcaatttcaattgagagattttctcctttgtgaaatgaaataaccta 270  Q
    |||| ||||||||||   |||||||||||||||||||||||||||||||    
T  8910862 tttcgatttcaattgtaggattttctcctttgtgaaatgaaataaccta 8910814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 15190754 - 15190702
Alignment:
Q  367 ggaaatcgtatgggacgttgaataccatctggaaaccatcgttcaagtgttgg 419  Q
    ||||||||||||||||||||||| |||| ||||||  | ||||||||||||||    
T  15190754 ggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttgg 15190702  T

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