View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14152_low_22 (Length: 405)
Name: NF14152_low_22
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 389
Target Start/End: Complemental strand, 15281606 - 15281228
Alignment:
| Q |
13 |
aaggttataatcataagtaatgtatctagttacactatttacctctaataatctaaatatttttcttcataattgtcctagtaatttatatggctactat |
112 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15281606 |
aaggttataatcataaataatgtatctagttacactatttacctctaat---ctaaatatttttcttcataattgtcctagtaatttatatggctactat |
15281510 |
T |
|
| Q |
113 |
attttattttcttcttggatatgaccgctatttaataggggccaaactcacat----atttcaactaataatagaggacatattggaaaaagtttatcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15281509 |
attttattttcttcttggatatgaccgctacttaataggggccaaactcacatattaatttcaactaataatagaggacatattggaaaaagtttatcaa |
15281410 |
T |
|
| Q |
209 |
aaggtttatattagtatatctcaactcaaatcttgtaaaaatattaattttcat------ttgaaaattgagatgaatttgacaagtgtaattctttata |
302 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15281409 |
aaggtttatattagta-----cacctcaaatcttgtaaaaatattaattttcatttgaaattgaaaattgagatgaatttgacaagtgtaattctttata |
15281315 |
T |
|
| Q |
303 |
tgcacttgttgcacatttcattggtcttgtgtttcgtaagaggaataacattctttgaccactaggcactaacatgtgtatagtttt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15281314 |
tgcacttgttgcacatttcattggtcttgtgtttcgtaagaggaataacattctttgaccactaggcactaacatgtgtatagtttt |
15281228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University