View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_25 (Length: 394)
Name: NF14152_low_25
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_25 |
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| [»] scaffold0510 (2 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 86 - 306
Target Start/End: Original strand, 21150472 - 21150692
Alignment:
| Q |
86 |
aagcttgaattctagcttcacaaaattcacattcatatcaaatcaggacacaaaaaatgtgaggcagacgcaaatccaaatactcactagaacaagttca |
185 |
Q |
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||||||||||| |||||||||||||||||| |||||| ||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
21150472 |
aagcttgaattttagcttcacaaaattcacgttcataccaaatcaggacacgagaaatgtgaggcagatgcaaatccaaatactcactagaacatgttca |
21150571 |
T |
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| Q |
186 |
atctaccaacaatgagggtgagtttatttttggttatgagactaatattgtgaagttggtgttaccactacctctacaaataatgagcctgtcaaagaga |
285 |
Q |
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||| || | ||| |||||||||| ||||||||||||| |||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
21150572 |
atcaacaactaataagggtgagttgatttttggttatgggactaatattgtgatgttgatgttaccactgcctctacaaataatgagcctgtcaaagaga |
21150671 |
T |
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| Q |
286 |
atgcttctgatattcatgaag |
306 |
Q |
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||||||||||||||||||||| |
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| T |
21150672 |
atgcttctgatattcatgaag |
21150692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 35 - 293
Target Start/End: Original strand, 33714052 - 33714308
Alignment:
| Q |
35 |
atagtctgtttggaactgcgtccagaaggcatcaaacacacatatagaaagaagcttgaattctagcttcacaaaattcacattcatatcaaatcaggac |
134 |
Q |
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|||||||||| ||||||||||||| ||||||||||| | |||||| ||||||||||||| |||||||||||||||||| |||||| ||||||| || |
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| T |
33714052 |
atagtctgttaggaactgcgtccaaaaggcatcaaatgcgtgtatagagagaagcttgaattatagcttcacaaaattcacgttcatagcaaatcattac |
33714151 |
T |
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| Q |
135 |
acaaaaaatgtgaggcagacgcaaatccaaatactcactagaacaagttcaatctaccaacaatgagggtgag-tttatttttggtt---atgagactaa |
230 |
Q |
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|| | |||||||||||||||||| |||||||||||||| | |||| ||||||||||||| ||| |||||||| ||| ||||||||| |||||||||| |
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| T |
33714152 |
acgagaaatgtgaggcagacgcatatccaaatactcaccaaaacatgttcaatctaccactaataagggtgagttttttttttggttatgatgagactaa |
33714251 |
T |
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| Q |
231 |
tattgtgaagttggtgttaccactacctctacaaataatgagcctgtcaaagagaatgcttct |
293 |
Q |
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| T |
33714252 |
tattgtga------tgttacaactacctctacaaataatgagcctgtcaaagagaatgcttct |
33714308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 240 - 332
Target Start/End: Original strand, 33726332 - 33726424
Alignment:
| Q |
240 |
gttggtgttaccactacctctacaaataatgagcctgtcaaagagaatgcttctgatattcatgaagtggatccttctccttctcccaaagga |
332 |
Q |
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|||| |||||||||||||||| ||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
33726332 |
gttgatgttaccactacctctccaaataatgagcccgtcaaagagaaggcttcagatattaatgaagtggatccttctccttctcccaaagga |
33726424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 125 - 237
Target Start/End: Original strand, 23897148 - 23897260
Alignment:
| Q |
125 |
aaatcaggacacaaaaaatgtgaggcagacgcaaatccaaatactcactagaacaagttcaatctaccaacaatgagggtgagtttatttttggttatga |
224 |
Q |
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||||| |||||| | ||||||||| |||||||||||||||||||| | |||| ||||||||||||| ||| | |||||||||||| |||||||||| |
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| T |
23897148 |
aaatcgggacacgagaaatgtgagacagacgcaaatccaaatacttcttgaaacatgttcaatctaccactaataatggtgagtttattcttggttatga |
23897247 |
T |
|
| Q |
225 |
gactaatattgtg |
237 |
Q |
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||||||||||||| |
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| T |
23897248 |
gactaatattgtg |
23897260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 21241801 - 21241737
Alignment:
| Q |
249 |
accactacctctacaaataatgagcctgtcaaagagaatgcttctgatattcatgaagtggatcc |
313 |
Q |
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|||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
21241801 |
accactacctctgcaaattatgactctgtcaaagagaatgcttctgatattcatgaagtgtatcc |
21241737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 21286911 - 21286971
Alignment:
| Q |
253 |
ctacctctacaaataatgagcctgtcaaagagaatgcttctgatattcatgaagtggatcc |
313 |
Q |
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|||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
21286911 |
ctacctctgcaaattatgactctgtcatagagaatgcttctgatattcatgaagtggatcc |
21286971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 23897057 - 23897122
Alignment:
| Q |
17 |
tgaataggtactaatataatagtctgtttggaactgcgtccagaaggcatcaaacacacatataga |
82 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||| |||||| |||| ||| |||||| |
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| T |
23897057 |
tgaataggtacaaatataatagtctgtttgaaactgcgtccaacaggcattaaacccacgtataga |
23897122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0510
Description:
Target: scaffold0510; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 125 - 237
Target Start/End: Complemental strand, 892 - 780
Alignment:
| Q |
125 |
aaatcaggacacaaaaaatgtgaggcagacgcaaatccaaatactcactagaacaagttcaatctaccaacaatgagggtgagtttatttttggttatga |
224 |
Q |
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||||| |||||| | ||||||||| |||||||||||||||||||| | |||| ||||||||||||| ||| | |||||||||||| |||||||||| |
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| T |
892 |
aaatcgggacacgagaaatgtgagacagacgcaaatccaaatacttcttgaaacatgttcaatctaccactaataatggtgagtttattcttggttatga |
793 |
T |
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| Q |
225 |
gactaatattgtg |
237 |
Q |
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||||||||||||| |
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| T |
792 |
gactaatattgtg |
780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 983 - 918
Alignment:
| Q |
17 |
tgaataggtactaatataatagtctgtttggaactgcgtccagaaggcatcaaacacacatataga |
82 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||| |||||| |||| ||| |||||| |
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| T |
983 |
tgaataggtacaaatataatagtctgtttgaaactgcgtccaacaggcattaaacccacgtataga |
918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 64973 - 64918
Alignment:
| Q |
161 |
ccaaatactcactagaacaagttcaatctaccaacaatgagggtgagtttattttt |
216 |
Q |
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|||||||||||||| |||| |||| |||||||| ||| ||||||||||||||||| |
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| T |
64973 |
ccaaatactcactaaaacatgttctatctaccactaataagggtgagtttattttt |
64918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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