View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_30 (Length: 374)
Name: NF14152_low_30
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 4120568 - 4120232
Alignment:
| Q |
18 |
tgaaggaatagctcgaggtataatgtatcttcataaagactcaagacttaagattatacatagagatttaaaagcaagcaatgtcttacttgatggagac |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4120568 |
tgaaggaatagctcgaggtataatgtatcttcatagagactcaagacttaagattatacatagagatttaaaagcaagcaatgtcttacttgatggagac |
4120469 |
T |
|
| Q |
118 |
atgattccaaagatatcagactttgggttagctagaattgttaaaggtggagaagatgatgaagctaacacgaaaagggttgtcggaacttagtaagtaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4120468 |
atgattccaaagatatcagactttgggttagctagaattgttaaaggtggagaagatgatgaagctaacacgaaaagggttgtcggaacttagtaagtaa |
4120369 |
T |
|
| Q |
218 |
tcctatctcattgaacattatattgttgggattattaatgctacaaatgaattgtttaatcattactcgtgttattataacatatatgctttaaatgcag |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4120368 |
tcctatctcattgaacattatattgttgggattattaatgctacaaatgaattgtttaatcattactcctgttattataacatatatgctttaaatgcag |
4120269 |
T |
|
| Q |
318 |
tggttatatgccgccagaatatgcaatggaggggctt |
354 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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|
| T |
4120268 |
tggttatatgccgccagaatatgcaatggaggggctt |
4120232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 4130652 - 4130321
Alignment:
| Q |
18 |
tgaaggaatagctcgaggtataatgtatcttcataaagactcaagacttaagattatacatagagatttaaaagcaagcaatgtcttacttgatggagac |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| || |
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| T |
4130652 |
tgaaggaatagctcgaggaataatgtatcttcatagagactcgagacttaagattatacacagagatttaaaagcaagcaacatcttacttgatgatgag |
4130553 |
T |
|
| Q |
118 |
atgattccaaagatatcagactttgggttagctagaattgttaaaggtggagaagatgatgaagctaacacgaaaagggttgtcggaacttagtaagtaa |
217 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
4130552 |
atgattccaaaaatatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagtat |
4130453 |
T |
|
| Q |
218 |
tcctatctcattgaacattatattgttgggattattaatgctacaaatgaattgtttaatcattactcgtg---ttattataacatatatgctttaaatg |
314 |
Q |
| |
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|||||| ||||| ||| |||| |||| || |||||| ||||||| | | ||| | ||||| || ||||||||| ||||||||| |||||| |
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| T |
4130452 |
tcctatatcatttgacaatataatgttaaaataattaatcttacaaattagtgagttagttattacatatgtacttattataatatatatgctctaaatg |
4130353 |
T |
|
| Q |
315 |
cagtggttatatgccgccagaatatgcaatgg |
346 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
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|
| T |
4130352 |
tagtggttatatgccgcctgaatatgcaatgg |
4130321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 4143003 - 4142771
Alignment:
| Q |
19 |
gaaggaatagctcgaggtataatgtatcttcataaagactcaagacttaagattatacatagagatttaaaagcaagcaatgtcttacttgatggagaca |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||| |||| |
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|
| T |
4143003 |
gaagggatagctcgaggtataatgtatcttcatagagactcaagactaaggattatacatagagatttaaaagccagcaacgtcttacttgatggcgaca |
4142904 |
T |
|
| Q |
119 |
tgattccaaagatatcagactttgggttagctagaattgttaaaggtggagaagatgatgaagctaacacgaaaagggttgtcggaacttagtaagtaat |
218 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
4142903 |
tgattccaaaaatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaat |
4142804 |
T |
|
| Q |
219 |
cctatctcattgaacattatattgttgggatta |
251 |
Q |
| |
|
| |||||||| | |||||| | |||||| |||| |
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|
| T |
4142803 |
catatctcatcggacattacaatgttggaatta |
4142771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 4151016 - 4150783
Alignment:
| Q |
18 |
tgaaggaatagctcgaggtataatgtatcttcataaagactcaagacttaagattatacatagagatttaaaagcaagcaatgtcttacttgatggagac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||| | ||| |||||||||||| ||||||||||||| ||||||||||| | ||| |
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|
| T |
4151016 |
tgaaggaatagctcgaggtataatgtatcttcatagagactcgagactaaggatcatacatagagatctaaaagcaagcaacatcttacttgatagtgac |
4150917 |
T |
|
| Q |
118 |
atgattccaaagatatcagactttgggttagctagaattgttaaaggtggagaagatgatgaagctaacacgaaaagggttgtcggaacttagtaagtaa |
217 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
4150916 |
atgattccaaaaatatcagacttcggtttagcaagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtag |
4150817 |
T |
|
| Q |
218 |
tcctatctcattgaacattatattgttgggatta |
251 |
Q |
| |
|
| |||||||||| | |||||| |||||| |||| |
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|
| T |
4150816 |
tactatctcatttgatattataatgttggaatta |
4150783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 4160033 - 4159806
Alignment:
| Q |
18 |
tgaaggaatagctcgaggtataatgtatcttcataaagactcaagacttaagattatacatagagatttaaaagcaagcaatgtcttacttgatggagac |
117 |
Q |
| |
|
|||||| ||||||||||||||| | |||||||||| |||||| || || | |||||||||| | ||||||||||||||||| ||||||||||||| || |
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|
| T |
4160033 |
tgaaggcatagctcgaggtatactttatcttcatagagactcgaggctaaggattatacatcgggatttaaaagcaagcaacatcttacttgatggggag |
4159934 |
T |
|
| Q |
118 |
atgattccaaagatatcagactttgggttagctagaattgttaaaggtggagaagatgatgaagctaacacgaaaagggttgtcggaacttagtaagtaa |
217 |
Q |
| |
|
||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| | ||||| || |||||||| ||||||||||||| | |
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|
| T |
4159933 |
atggttccaaaaatatcagactttggtttagctagaattgttaaaggaggagaagatgatgaaacaaacacaaatagggttgttggaacttagtaagcag |
4159834 |
T |
|
| Q |
218 |
tc-ctatctcattgaacattatattgtt |
244 |
Q |
| |
|
|| ||||||||| ||||||||| |||| |
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|
| T |
4159833 |
tctttatctcatttaacattataatgtt |
4159806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 4150721 - 4150676
Alignment:
| Q |
309 |
taaatgcagtggttatatgccgccagaatatgcaatggaggggctt |
354 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4150721 |
taaatgcagtggttatatgccgcctgaatatgcaatggaggggctt |
4150676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 4142703 - 4142658
Alignment:
| Q |
309 |
taaatgcagtggttatatgccgccagaatatgcaatggaggggctt |
354 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
4142703 |
taaatgcagtggttatatgccacctgaatatgcaatggaggggctt |
4142658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 4159729 - 4159684
Alignment:
| Q |
302 |
tatgctttaaatgcagtggttatatgccgccagaatatgcaatgga |
347 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4159729 |
tatgctctaaatgcagtggttatatgccgcctgaatatgcaatgga |
4159684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 36366411 - 36366510
Alignment:
| Q |
41 |
tgtatcttcataaagactcaagacttaagattatacatagagatttaaaagcaagcaatgtcttacttgatggagacatgattccaaagatatcagactt |
140 |
Q |
| |
|
|||||||||| |||| || ||| ||| ||| || ||||||||| | || |||||||| | ||||||||||||| |||| |||||||||||||||||| |
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|
| T |
36366411 |
tgtatcttcaccaagattctagatttaggatcatccatagagatcttaaggcaagcaacattctacttgatggagagatgaatccaaagatatcagactt |
36366510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 487060 - 486960
Alignment:
| Q |
43 |
tatcttcataaagactcaagacttaagattatacatagagatttaaaagcaagcaatgtcttacttgatggagacatgattccaaagatatcagactttg |
142 |
Q |
| |
|
||||||||| |||| || |||||| | || |||||||||||| |||||||||| ||||| ||| | || ||||||| |||||||| |||||||||| |
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|
| T |
487060 |
tatcttcatgaagattctagacttcaaataatacatagagatctaaaagcaagtaatgtgttattggacaatgacatgaacccaaagatttcagactttg |
486961 |
T |
|
| Q |
143 |
g |
143 |
Q |
| |
|
| |
|
|
| T |
486960 |
g |
486960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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