View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_33 (Length: 368)
Name: NF14152_low_33
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 30735404 - 30735049
Alignment:
| Q |
1 |
cttcaacaatattagttcaaacaaaatctttatagcaagagcttcagtagctaataaaatggtggttaggtttcaactttcaatcaatgttactgtagtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30735404 |
cttcaacaatattagttcaaacaaaatctttatagcaagagcttcagtagctaataatctggtggttaggtttcaactttcaatcaatgttattgtagtg |
30735305 |
T |
|
| Q |
101 |
atttactacaatcaatatattctataaaaggaacaaatatggcaatgcatgaagctcctaagtatacaccttttgttcttatttgttt-actatacacta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |
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| T |
30735304 |
atttactacaatcaatatattctataaaaggaacaaatattgcaatgcatgaagctcctaagtatacaccttttgttctaattttttttactatacacta |
30735205 |
T |
|
| Q |
200 |
tatgtcaggaatcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30735204 |
tatgtcaggaatcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacc |
30735105 |
T |
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| Q |
300 |
tgacactgaattagaacattccaaccttcaaataatagcctttcacaattcatctc |
355 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30735104 |
tgacattgaattagaacattccaaccttcaaataatagcctttcacaattcatctc |
30735049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 14665756 - 14666111
Alignment:
| Q |
1 |
cttcaacaatattagttcaaacaaaatctttatagcaagagcttcagtagctaataaaatggtggttaggtttcaactttcaatcaatgttactgtagtg |
100 |
Q |
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| T |
14665756 |
cttcaacaatattagttcaaacaaaatctttatagcaagagcttcagtagctaataaactgggggttaggtttcaactttcaatcaatgttattgtagtg |
14665855 |
T |
|
| Q |
101 |
atttactacaatcaatatattctataaaaggaacaaatatggcaatgcatgaagctcctaagtatacaccttttgttcttatttgttt-actatacacta |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |
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| T |
14665856 |
atttactacaatcaatatattctataaaaggaacaaatatagcaatgcatgaagctcctaagtatacaccttttgttctaattttttttactatacacta |
14665955 |
T |
|
| Q |
200 |
tatgtcaggaatcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacc |
299 |
Q |
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| T |
14665956 |
tatgtcaggaatcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacc |
14666055 |
T |
|
| Q |
300 |
tgacactgaattagaacattccaaccttcaaataatagcctttcacaattcatctc |
355 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14666056 |
tgacattgaattagaacattccaaccttcaaataatagcctttcacaattcatctc |
14666111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 111 - 339
Target Start/End: Complemental strand, 14673121 - 14672893
Alignment:
| Q |
111 |
atcaatatattctataaaaggaacaaatatggcaatgcatgaagctcctaagtatacaccttttgttcttatttgtttactatacactatatgtcaggaa |
210 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| |
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| T |
14673121 |
atcaaaatattctataaaaggaacaaatatggcaatgccagaagttcctaagtatacacattttgttctaattcttttactatacactatatgtcaggaa |
14673022 |
T |
|
| Q |
211 |
tcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgacactgaat |
310 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || | |||| | ||||||||||||| |||||| | ||||| |
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| T |
14673021 |
tcacttgcctcgttcaatcccattgataattatttggtcgcttgtggttcatcccataatatcacatttcatggtcgaactttcacacctgatattgaat |
14672922 |
T |
|
| Q |
311 |
tagaacattccaaccttcaaataatagcc |
339 |
Q |
| |
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| T |
14672921 |
tcgaacattcaaatcttcaaataatagcc |
14672893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 111 - 339
Target Start/End: Complemental strand, 14678499 - 14678271
Alignment:
| Q |
111 |
atcaatatattctataaaaggaacaaatatggcaatgcatgaagctcctaagtatacaccttttgttcttatttgtttactatacactatatgtcaggaa |
210 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| |
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| T |
14678499 |
atcaaaatattctataaaaggaacaaatatggcaatgccagaagttcctaagtatacacattttgttctaattcttttactatacactatatgtcaggaa |
14678400 |
T |
|
| Q |
211 |
tcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgacactgaat |
310 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || | |||| | ||||||||||||| |||||| | ||||| |
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| T |
14678399 |
tcacttgcctcgttcaatcccattgataattatttggtcgcttgtggttcatcccataatatcacatttcatggtcgaactttcacacctgatattgaat |
14678300 |
T |
|
| Q |
311 |
tagaacattccaaccttcaaataatagcc |
339 |
Q |
| |
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| |||||||| || ||||||||||||||| |
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| T |
14678299 |
tcgaacattcaaatcttcaaataatagcc |
14678271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 130 - 345
Target Start/End: Complemental strand, 14687781 - 14687566
Alignment:
| Q |
130 |
ggaacaaatatggcaatgcatgaagctcctaagtatacaccttttgttcttatttgtttactatacactatatgtcaggaatcacttgcctcgttcaatc |
229 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| |||||||||| | ||| ||||||||| ||||||| ||||||| |
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| T |
14687781 |
ggaacaaatatggcaatgcatcaagttcctaagtatacaccttttgttctaattcttttactatactccgcatgccaggaatcatttgcctcattcaatc |
14687682 |
T |
|
| Q |
230 |
ccatcgataattatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgacactgaattagaacattccaaccttca |
329 |
Q |
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|
|||||||||||||||||||| |||||||||||||| |||| || | |||| |||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
14687681 |
ccatcgataattatttggtcacttgtggttcatcttataatatcacatttcagggtcgaactttcatacctgacattgaattcgaacattccaaccttca |
14687582 |
T |
|
| Q |
330 |
aataatagcctttcac |
345 |
Q |
| |
|
|||||||||||||||| |
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| T |
14687581 |
aataatagcctttcac |
14687566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 14687827 - 14687785
Alignment:
| Q |
16 |
ttcaaacaaaatctttatagcaagagcttcagtagctaataaa |
58 |
Q |
| |
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|||||||||||||| ||||| ||||||||| |||||||||||| |
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| T |
14687827 |
ttcaaacaaaatctatatagaaagagcttcggtagctaataaa |
14687785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 172 - 334
Target Start/End: Original strand, 24057064 - 24057226
Alignment:
| Q |
172 |
tttgttcttatttgtttactatacactatatgtcaggaatcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatctcataaca |
271 |
Q |
| |
|
|||||||||||| ||||||| || | ||||| ||||||| | ||||||||| ||||||| |||||||||||||||||||||||||| || || || |
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| T |
24057064 |
tttgttcttattcttttactaaacgtcacatgtcgggaatcattcgcctcgttccatcccattgataattatttggtcgcttgtggttcttcccacaatg |
24057163 |
T |
|
| Q |
272 |
taaaatttgagggtcgaactttcatacctgacactgaattagaacattccaaccttcaaataa |
334 |
Q |
| |
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| | ||| |||||||||||||| |||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
24057164 |
tcacgtttcagggtcgaactttcgtacctgacactgaatttgaacattccaactttcaaataa |
24057226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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