View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_34 (Length: 368)
Name: NF14152_low_34
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 36135181 - 36134826
Alignment:
| Q |
1 |
tatatacacacacattattttctctttatctttgtttccattatattattaacatatcacatttatcacatcactctatctatttttcttctctcttaaa |
100 |
Q |
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| T |
36135181 |
tatatacacacacattattttctctttatctttgtttccattatattattaacatatcacatttatcacatcactctatctatttttcttctctcttaaa |
36135082 |
T |
|
| Q |
101 |
tattgaaacacccattagagtaaggtatttctaagcagttcatctagaaatttgttcgagcaagagaacatttttgacaatatagcccnnnnnnngtgaa |
200 |
Q |
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| T |
36135081 |
tattgaaacacccattagagtaaggtatttctaagcagttcatctagaaatttgttcgagcaagagaacatttttgacaatatagcccaaaaaaagtgaa |
36134982 |
T |
|
| Q |
201 |
tatataatggattaacacattccattgttcaaaacaagctacatcatcaaacattcttcattcttgctactggctcatctcaatcacaaagtacacaaat |
300 |
Q |
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| T |
36134981 |
tatataatggattaacacattccattgttcaaaacaagctacatcatcaaacattcttcattcttgctactggctcatctcaatcacaaagtacacaaat |
36134882 |
T |
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| Q |
301 |
acacatattgaattggaaaattttgcattgatattagaaatcgctaacaatattca |
356 |
Q |
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| T |
36134881 |
acacatattgaatttgaaaattttacattgatattagaaatcgctaacaatattca |
36134826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 6463213 - 6463169
Alignment:
| Q |
29 |
tctttgtttccattatattattaacatatcacatttatcacatca |
73 |
Q |
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||||| || |||||| || |||||||||||||||||||||||||| |
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| T |
6463213 |
tcttttttcccattacatcattaacatatcacatttatcacatca |
6463169 |
T |
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