View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_36 (Length: 359)
Name: NF14152_low_36
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 33299367 - 33299038
Alignment:
| Q |
1 |
caaacacttcagaatgaagttgtgtcaaacatgcgtttgacaccaacacgacacgactacaacacatgtacaattacttcaaattttcaaatagtggtgt |
100 |
Q |
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| T |
33299367 |
caaacacttcataatgaagttgtgtcaaacatgtgtttgacaccatcacgacacgactacaacacatatataattacttcaaattttcaaatagtgatgt |
33299268 |
T |
|
| Q |
101 |
agacgtttcaatgtcgatatttagtgtctgtatttgtgtcagtgcttcatagcttatggttagtgcaaaatttagacagttgataataataaatacataa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
33299267 |
agacgtttcaatgtcgatatttagtgtccgtatttgtgtcagtgcttcatagcttatggttagtgcaaaatttagatagttg--------------ataa |
33299182 |
T |
|
| Q |
201 |
tgtagagacataactaacctttaaattaccacagattgcttgtgtaagtgctgagttgacagttgtattcaaaacaacaatgtagtttataaagaaagta |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33299181 |
tgtagaaacataactaacctttaaattaccacagattgcttgtgtaagtgctgagttgacagttgtattcaaaactacaatgtagtttataaagaaagta |
33299082 |
T |
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| Q |
301 |
aaagcacatgacataaccattacaacctgctcaagattccaatg |
344 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33299081 |
aaagcacatgacataaccattacaacctgccaaagattccaatg |
33299038 |
T |
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