View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_4 (Length: 616)
Name: NF14152_low_4
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_4 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 19 - 601
Target Start/End: Complemental strand, 230449 - 229864
Alignment:
| Q |
19 |
tgactaataggaggatgccatatgacctctttgatctgaggagccctaggagggtgactattaattctgaacttcttgatgatagaaaaatctgacattg |
118 |
Q |
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| T |
230449 |
tgactaataggaggatgccatatgacctctttgatctgaggagccctaggagagtgaatattaactctgaacttcttgatgatagaaaaatccgacattg |
230350 |
T |
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| Q |
119 |
atgatttcgatgaagctttggagttgttaacagataaatctccattagaagagattaaagaaatgacactcttccaatgtattgttttatctttgaatct |
218 |
Q |
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| T |
230349 |
atgagtttgatgaagctttggagttgttaccagataaagctacattagaagagattaaagaaatggcactcttccaatgtattgttttatctttgaatct |
230250 |
T |
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| Q |
219 |
agt---attcctggaaaaccaaatagttgataagacattgatgatggctgctttgatcactatcttgcactgagggttccaccttctatcacagatgtgc |
315 |
Q |
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| T |
230249 |
agttgtattcctggaaaaccaaatagttgataagacattgatgatggctgctttgatcactatcttgcactgagggttccaccttctatcacagatgtgc |
230150 |
T |
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| Q |
316 |
caaatttcgtcaatattgttaaagtgaaaattgaaatttagagtattagctagccagttccagattctcattgcataagggcaagcaaagaataagtgaa |
415 |
Q |
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| T |
230149 |
caaatttcgtcaatattgttaaagtgaaaattgaaatttagagtattagctagccggttctagattctcattgcataagggcaagcaaagaataagtgaa |
230050 |
T |
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| Q |
416 |
atgttgtttcttcttgactcagacaaagggtgcagatggatgggaacttacaatctctttccttaagcttttcatctatatgcattctgtcatgcataat |
515 |
Q |
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| T |
230049 |
atgttgtttcttcttgactcagacaaagggtgcagatggatgggaacttacaatctctttccttaagcttttcatctataggcattctgtcatgcataat |
229950 |
T |
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| Q |
516 |
tctccatgctacaaatgatctggatggaggaatgtcaatactccatatagttgtggcccaatgaatcttctgcattgtgtgagatt |
601 |
Q |
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| T |
229949 |
tctccatgctacaaatgatctggatggaggaatgtcaatactccatatagttgtggcccaatgaatcttctgcattgtgtgagatt |
229864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 12488077 - 12487951
Alignment:
| Q |
19 |
tgactaataggaggatgccatatgacctctttgatctgaggagccctaggagggtgactattaattctgaacttcttgatgatagaaaaatctgacattg |
118 |
Q |
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| T |
12488077 |
tgactaataggagggtgccatatgacctctttgatctgaggagccctaggagggtgaatattaactctgaacttcttgatgatagcaaaatccgacattg |
12487978 |
T |
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| Q |
119 |
atgatttcgatgaagctttggagttgt |
145 |
Q |
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| T |
12487977 |
atgagtttgatgaagctttggaattgt |
12487951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 70716 - 70658
Alignment:
| Q |
277 |
atcttgcactgagggttccaccttctatcacagatgtgccaaatttcgtcaatattgtt |
335 |
Q |
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| T |
70716 |
atcttgcactgaggactccaccatctatcacggatgtgccaaatatcttctatattgtt |
70658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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