View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14152_low_40 (Length: 348)
Name: NF14152_low_40
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 17058197 - 17057874
Alignment:
| Q |
16 |
atttgttcagcactgcaaagaatccatgggagatttgggaagagttcggaacttcctactcgtatcgtgaaaaagacctatacttctttacaaccttaaa |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
17058197 |
atttgttcggcactgcaaagaatccatgggagatttgggaagagttcggaacttccaactcaaatcgtggaaaagacttatacttctttacaaccttaaa |
17058098 |
T |
|
| Q |
116 |
gaagaaatctgcaactagctctcgtgtagttcgcactattggacttggtcgatgggaaggtgaagatgctgggaaaaatatattcgccaaagacaagaac |
215 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
17058097 |
gaagaaatctgcaactagctcgcgcgtagttcgcactattggacttggtagatgggaaggtgaagattctggaaaaaatatattcgccaaagacaagaac |
17057998 |
T |
|
| Q |
216 |
caaatcctcggcatgaaaaaacgttttcgttttgagaagagtgacacttctcaagatggtggatggattttgcatgaatatagcctccataattctttga |
315 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17057997 |
caaatccttggcatgaaaaaacgttttcgttttgagaagagtgacacttctcaagatggtggatggattttgcatgaatatagcctccacaattctttga |
17057898 |
T |
|
| Q |
316 |
taagcaatcctttggtaagcccta |
339 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
17057897 |
taagcaatcctttggtaagcccta |
17057874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 32 - 335
Target Start/End: Original strand, 6044442 - 6044738
Alignment:
| Q |
32 |
aaagaatccatgggagatttgggaagagttcggaacttcctactcgtatcgtgaaaaagacctatacttctttacaaccttaaagaagaaatctgcaact |
131 |
Q |
| |
|
||||||||| |||||||||||||||||||| | || ||| |||| |||| || ||||||| |||| ||||| || ||||||||||||| |||| | ||| |
|
|
| T |
6044442 |
aaagaatccttgggagatttgggaagagtttgcaagttctcactcatatcctggaaaagacttatatttcttcactaccttaaagaagacatctcccact |
6044541 |
T |
|
| Q |
132 |
agctctcgtgtagttcgcactattggacttggtcgatgggaaggtgaagatgctgggaaaaatatattcgccaaagacaagaaccaaatcctcggcatga |
231 |
Q |
| |
|
|| || | |||||||||||||| ||||| |||||||| || | || |||| |||| | | |||||| |||||||| ||| || ||| |
|
|
| T |
6044542 |
agtaaacgcttcattcgcactattggaattggtacatgggaagcgtaa----ccggaaaaagtatagttgacaaaga---gaaccaaaccctaggtctga |
6044634 |
T |
|
| Q |
232 |
aaaaacgttttcgttttgagaagagtgacacttctcaagatggtggatggattttgcatgaatatagcctccataattctttgataagcaatcctttggt |
331 |
Q |
| |
|
|||||||||| | |||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| || | |||||||| | |||| ||| ||| |
|
|
| T |
6044635 |
aaaaacgtttctgctttgagaagagtaacacttctaaagatggtggatggatcttgcatgaatatagccttcacatatctttgattaacaatgcttcggt |
6044734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 141 - 335
Target Start/End: Complemental strand, 22598758 - 22598561
Alignment:
| Q |
141 |
gtagttcgcactattggacttggtcgatgggaaggtgaagatg---ctgggaaaaatatattcgccaaagacaagaaccaaatcctcggcatgaaaaaac |
237 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||||||| | |||| |||| |||| | || ||| ||||||||||| || | || |||||||| |
|
|
| T |
22598758 |
gtagttcgttctattggaattggtgcatgggaaggtgaagaagacactggaaaaattatagttgcaaaaaacaagaaccaactcattggtgtgaaaaaat |
22598659 |
T |
|
| Q |
238 |
gttttcgttttgagaagagtgacacttctcaagatggtggatggattttgcatgaatatagcctccataattctttgataagcaatcctttggtaagc |
335 |
Q |
| |
|
||||||| |||||||| |||| ||||| || ||||||| |||||| ||||||||||||||||| | || ||||||||||| ||| ||||||||||| |
|
|
| T |
22598658 |
gttttcgatttgagaatagtggcacttaccatgatggtgaatggatcttgcatgaatatagccttgacaaatctttgataagaaattctttggtaagc |
22598561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 22598849 - 22598778
Alignment:
| Q |
32 |
aaagaatccatgggagatttgggaagagttcggaacttcctactcgtatcgtgaaaaagacctatacttctt |
103 |
Q |
| |
|
||||||||| ||||| ||||||||||| || ||| |||| | ||| ||| |||||||||||||||| ||||| |
|
|
| T |
22598849 |
aaagaatccttgggatatttgggaagaatttggagcttcttgctcatattgtgaaaaagacctatatttctt |
22598778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 23433106 - 23432928
Alignment:
| Q |
14 |
caatttgttcagcactgcaaagaatccatgggagatttgggaagagttcggaacttcctactcgtatcgtgaaaaagacctatacttctttacaacctta |
113 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||| ||| ||| | | || |||| || |||| |||| ||||||||| |||||||| |
|
|
| T |
23433106 |
caatttgttcagtaccacaaagaatccatgggagatttgggaagagtttggagctttccattcatatcatggaaaatacctttacttctttgcaacctta |
23433007 |
T |
|
| Q |
114 |
aagaagaaatctgcaactagctctcgtgtagttcgcactattggacttggtcgatgggaaggtgaagatgctgggaaaa |
192 |
Q |
| |
|
|||||||||| || | ||||||| || |||||| ||||||||||||| || ||| ||| ||||||||||||||||||| |
|
|
| T |
23433006 |
aagaagaaatttgtagctagctcacgcatagttcacactattggacttcgtagataggagggtgaagatgctgggaaaa |
23432928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 335
Target Start/End: Complemental strand, 48060358 - 48060055
Alignment:
| Q |
32 |
aaagaatccatgggagatttgggaagagttcggaacttcctactcgtatcgtgaaaaagacctatacttctttacaaccttaaagaagaaatctgcaact |
131 |
Q |
| |
|
||||||||| |||||||||||||||||||| | | |||| |||| ||| ||| |||||||||||| ||||| || |||||||||||||||||||| ||| |
|
|
| T |
48060358 |
aaagaatccttgggagatttgggaagagtttgcaccttctcactcatattgtggaaaagacctatatttcttcactaccttaaagaagaaatctgccact |
48060259 |
T |
|
| Q |
132 |
agctctcgtgtagttcgcactattggacttggtcgatgggaaggtgaagatgctgggaaaaatatattcgccaaagacaagaaccaaatcctcggcatga |
231 |
Q |
| |
|
|| || | |||| ||||||||| |||| |||||||||||||| | || ||| ||| | |||||||| | ||| || || | || || | |
|
|
| T |
48060258 |
agtaaacgcttgattcgtactattggaagtggtacgtgggaaggtgaagacaccggaaaaggaatagttgccaaagagactaacaaagtcttaggtataa |
48060159 |
T |
|
| Q |
232 |
aaaaacgttttcgttttgagaagagtgacacttctcaagatggtggatggattttgcatgaatatagcctccataattctttgataagcaatcctttggt |
331 |
Q |
| |
|
||||||||||||| |||| ||||||| |||||| || || |||| |||||| ||||||||||||| ||| | || |||||||| | |||| ||||||| |
|
|
| T |
48060158 |
aaaaacgttttcgctttgggaagagtaacactttccatgacggtgcatggatcttgcatgaatataaccttgacaaatctttgattaacaatactttggt |
48060059 |
T |
|
| Q |
332 |
aagc |
335 |
Q |
| |
|
|||| |
|
|
| T |
48060058 |
aagc |
48060055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University