View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_41 (Length: 347)
Name: NF14152_low_41
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 22 - 335
Target Start/End: Original strand, 49376845 - 49377158
Alignment:
| Q |
22 |
tccatgaaccaaatgagccgaaggctcttaatgatatgtacctggagtatgttgataggcttcaggagcatagagaagaaggctctagtagaactagtgc |
121 |
Q |
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| T |
49376845 |
tccatgaactaaatgagccgaaggctcttaatgatatgtacctagagtatgctgataggcttcaggagcataaagaagaaggctctggtagaactagtgc |
49376944 |
T |
|
| Q |
122 |
tgatcaaaatgggctgacattggagccaacaaggcccacagggaggtcaaagttaatgaattatgtccaagaacaacaagcaattcctgctctaaaatct |
221 |
Q |
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| T |
49376945 |
tgatcaaaatgggttgacattggagccaacaagacccacagggtggtcaaagttaatgaattatgtccaagaacaacaagcaattcctgctgtaaaatct |
49377044 |
T |
|
| Q |
222 |
gaagttcaagagtatttgaatgagccaacttacaagcctaacgataatggtcgtatgtccttttgtgccttggaatggtggaagttgaatagcggaaaat |
321 |
Q |
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| T |
49377045 |
gaagttcaagagtatttgaatgagccaacttacaagcctaacaataatggtaatatgtccttttgtgccttggaatggtggaagttgaatagcggaaaat |
49377144 |
T |
|
| Q |
322 |
atagagtattatct |
335 |
Q |
| |
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||| |||||||||| |
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| T |
49377145 |
ataaagtattatct |
49377158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 42 - 335
Target Start/End: Complemental strand, 7445474 - 7445181
Alignment:
| Q |
42 |
aaggctcttaatgatatgtacctggagtatgttgataggcttcaggagcatagagaagaaggctctagtagaactagtgctgatcaaaatgggctgacat |
141 |
Q |
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| T |
7445474 |
aaggctcttaatgatatgtacctagagtatgttgataggcttcatgagcatagagaagaaggctctagtagaactagtgctggtcaaaatgggctgacat |
7445375 |
T |
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| Q |
142 |
tggagccaacaaggcccacagggaggtcaaagttaatgaattatgtccaagaacaacaagcaattcctgctctaaaatctgaagttcaagagtatttgaa |
241 |
Q |
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| T |
7445374 |
tggagccaacaagacccacaaggtggtcaaagttaatgaattatgtccaagaacaacaagcaattcctgctgtaaaatctgaagttcaagagtatttgaa |
7445275 |
T |
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| Q |
242 |
tgagccaacttacaagcctaacgataatggtcgtatgtccttttgtgccttggaatggtggaagttgaatagcggaaaatatagagtattatct |
335 |
Q |
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| T |
7445274 |
tgagccaacttacaagcctaacaataatggtcatatgtccttttgtgctttggaatggtggaagttgaatagcggaaaatataaagtattatct |
7445181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 42 - 331
Target Start/End: Complemental strand, 8112797 - 8112511
Alignment:
| Q |
42 |
aaggctcttaatgatatgtacctggagtatgttgataggcttcaggagcatagagaagaaggctctagtagaactagtgctgatcaaaatgggctgacat |
141 |
Q |
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||||||| ||||||||||||| | |||||| ||||| ||||||||||||| |||||| ||||||||||||||| ||||||| |||| ||| |||||| |
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| T |
8112797 |
aaggctcataatgatatgtacgtaaagtatgatgatatgcttcaggagcatggagaag---gctctagtagaactactgctgattaaaacgggttgacat |
8112701 |
T |
|
| Q |
142 |
tggagccaacaaggcccacagggaggtcaaagttaatgaattatgtccaagaacaacaagcaattcctgctctaaaatctgaagttcaagagtatttgaa |
241 |
Q |
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|| |||||||||| | ||||| ||||| | | ||||||||||| |||||||||||||||||| |||| |||||||||||||| |||||||| |||| |
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| T |
8112700 |
tgaagccaacaagagactcagggtggtcacaacaagtgaattatgtcaaagaacaacaagcaattcatgctgtaaaatctgaagttgaagagtatctgaa |
8112601 |
T |
|
| Q |
242 |
tgagccaacttacaagcctaacgataatggtcgtatgtccttttgtgccttggaatggtggaagttgaatagcggaaaatatagagtatt |
331 |
Q |
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| T |
8112600 |
ggagccaacttacaagtctaatgataatggtcatatgtccttttgtgcattggaatggcggaagttgaatagcggaaaatatagagtatt |
8112511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 42 - 286
Target Start/End: Original strand, 3804075 - 3804319
Alignment:
| Q |
42 |
aaggctcttaatgatatgtacctggagtatgttgataggcttcaggagcatagagaagaaggctctagtagaactagtgctgatcaaaatgggctgacat |
141 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3804075 |
aaggctcttaatgatatgtacctagagtatgctgataagcttcaggagcatagagaagaaggctctagtagaactagtgctgatcaaaatgggttgacat |
3804174 |
T |
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| Q |
142 |
tggagccaacaaggcccacagggaggtcaaagttaatgaattatgtccaagaacaacaagcaattcctgctctaaaatctgaagttcaagagtatttgaa |
241 |
Q |
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| T |
3804175 |
tagagccaacaagacccacggggtggtcaaagttaatgaattatgtccaagaacaacaagcaattcctgctgtaaaatctgaagttcaagagtatttgaa |
3804274 |
T |
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| Q |
242 |
tgagccaacttacaagcctaacgataatggtcgtatgtccttttg |
286 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3804275 |
tgagccaacttacaagcctaacgataatggtcatatgtccttttg |
3804319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 3804317 - 3804346
Alignment:
| Q |
306 |
ttgaatagcggaaaatatagagtattatct |
335 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3804317 |
ttgaatagcggaaaatatagagtattatct |
3804346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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