View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14152_low_42 (Length: 336)
Name: NF14152_low_42
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_42 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 29653617 - 29653938
Alignment:
| Q |
1 |
ctccactgagggaatttggaagatatggtggtggctagtttatgcagaaaagtgaccaaaccgccaccggatatgatcacttcacagccaacatgaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29653617 |
ctccactgagggaatttggaagatatggtggtggctagtttatgcagaaaagtgaccaaaccgccaccggatatgatcacttcacagccaacatgaacat |
29653716 |
T |
|
| Q |
101 |
tttgaaaggttgtgtttcaatttaaagaaaatttgaagtggagacaaattttactattcaaaatgcatgcagagggtggccannnnnnnnnnnnnnaata |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
29653717 |
tttgaaagggtgtgtttcaatttaaagaaaatttgaagtggagacaaattttactattcaaaatgcatgcagagggtgaccatttttttgttttttaata |
29653816 |
T |
|
| Q |
201 |
aataaaagtttagtcgttttgtccataagtcttagctcaactcacaaaaatattgaaattgttaggtcagaggttatgacaggtacgaaccctgactcct |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29653817 |
aataaaactttagtcgttttgtccataagtcttagctcaaatcacaaaaatattgaaattgctaggtcagaggtcatgacaggtacgaaccctgactcct |
29653916 |
T |
|
| Q |
301 |
tcacttatatgtatgagtttcc |
322 |
Q |
| |
|
|||||||| ||| ||||||||| |
|
|
| T |
29653917 |
tcacttatgtgtctgagtttcc |
29653938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 41323761 - 41323720
Alignment:
| Q |
225 |
ataagtcttagctcaactcacaaaaatattgaaattgttagg |
266 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||||||||| |
|
|
| T |
41323761 |
ataagtcttagctcaactcataaaaatgttaaaattgttagg |
41323720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 1223529 - 1223577
Alignment:
| Q |
232 |
ttagctcaactcacaaaaatattgaaattgttaggtcagaggttatgac |
280 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||||| || |||||||| |
|
|
| T |
1223529 |
ttagttcaactgacaaaaatgttgaaattgttaggtcggacgttatgac |
1223577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 5300454 - 5300405
Alignment:
| Q |
219 |
ttgtccataagtcttagctcaactcacaaaaatattgaaattgttaggtc |
268 |
Q |
| |
|
|||||||||||||||| || |||| | ||||||||||||||||||||||| |
|
|
| T |
5300454 |
ttgtccataagtcttaacttaactaataaaaatattgaaattgttaggtc |
5300405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 13849357 - 13849404
Alignment:
| Q |
224 |
cataagtcttagctcaactcacaaaaatattgaaattgttaggtcaga |
271 |
Q |
| |
|
|||||||| |||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
13849357 |
cataagtcctagctcaactgacaaaaatgtcgaaattgttaggtcaga |
13849404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 30215891 - 30215850
Alignment:
| Q |
224 |
cataagtcttagctcaactcacaaaaatattgaaattgttag |
265 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||||||||| |
|
|
| T |
30215891 |
cataagtcatagctcaactaacaaaaatattaaaattgttag |
30215850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 47086429 - 47086385
Alignment:
| Q |
222 |
tccataagtcttagctcaactcacaaaaatattgaaattgttagg |
266 |
Q |
| |
|
|||||||||| |||||||||| |||||||| | |||||||||||| |
|
|
| T |
47086429 |
tccataagtcctagctcaactgacaaaaatgtcgaaattgttagg |
47086385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 8050481 - 8050525
Alignment:
| Q |
222 |
tccataagtcttagctcaactcacaaaaatattgaaattgttagg |
266 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||||| |
|
|
| T |
8050481 |
tccataagtcttagctcaaccgacaaaaatgtcgaaattgttagg |
8050525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University