View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_44 (Length: 328)
Name: NF14152_low_44
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 38153120 - 38153420
Alignment:
| Q |
9 |
gaagcaaaggaagcaggttatactgaaccagatccaagagatgatctgtctggaactgatgttgcaagaaaggtgaaatgtgcaatattaacatatctgc |
108 |
Q |
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| T |
38153120 |
gaagcaaaggaagcaggttatactgaaccagatccaagagatgatctgtctggaactgatgttgcaagaaaggtgaaatgtgcaatattaacatatctgc |
38153219 |
T |
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| Q |
109 |
gacattttattctcacattttgaattgaattaagccaaatgtgtgaatgtttgttttgtattcgtaaaacattgaacctcgaatttatatataagcatgg |
208 |
Q |
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| T |
38153220 |
cacattttattctcacattttgaattgaattaagccaaatgtgtggatgtttgttttgtattcgcaaaacattgaacctcgaatttatatataagcatgg |
38153319 |
T |
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| Q |
209 |
tttcaaatttgatttacatgtataaacttgtatttgatttcaagcttaaatctgaatggttaaaatgttcagatactaaaaaccatagaaacatttgaaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38153320 |
tttcaaatttgatttacatgtataaacttgtatttgatttcaagcttaaatctgaatggttaaaatgttcagatactaaaaaccatagaaacatttgaaa |
38153419 |
T |
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| Q |
309 |
t |
309 |
Q |
| |
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| T |
38153420 |
t |
38153420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 35088268 - 35088195
Alignment:
| Q |
9 |
gaagcaaaggaagcaggttatactgaaccagatccaagagatgatctgtctggaactgatgttgcaagaaaggt |
82 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
35088268 |
gaagcaaaggaagcaggttatactgagcctgatccaagagatgatctgtctggaacagatgttgctagaaaggt |
35088195 |
T |
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