View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_48 (Length: 303)
Name: NF14152_low_48
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 34241744 - 34241583
Alignment:
| Q |
17 |
gaagtataataacacagaatcaaaaactctaactccattttcatcctgggaaatccaaaacatgaatgaaatgctcatgctgctgcctgctagtgttgga |
116 |
Q |
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| T |
34241744 |
gaagtataataacacagaatcaaaaactctaactccattttcatcctggaaaatccaaaacatgaatgaaatgctcatgctgctgcctgctagtgttgga |
34241645 |
T |
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| Q |
117 |
ctttctgggcatttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg |
178 |
Q |
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| T |
34241644 |
ctttctgggcatttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg |
34241583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 34241538 - 34241475
Alignment:
| Q |
223 |
ctagatcaaataagaatgagtcgatagattgtcacactcacatcaaaacttattttaaacagag |
286 |
Q |
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| T |
34241538 |
ctagatcaaataagaatgagtcgatagattgtcaaactcacatcaaaacttattttaaacagag |
34241475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 34233743 - 34233704
Alignment:
| Q |
247 |
tagattgtcacactcacatcaaaacttattttaaacagag |
286 |
Q |
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| T |
34233743 |
tagattgttacactcacaccaaaacttattttaaacagag |
34233704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 34234388 - 34234338
Alignment:
| Q |
128 |
tttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg |
178 |
Q |
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| T |
34234388 |
tttctgtttgtgtacttgcaaaactcaattttgtactaataagattagatg |
34234338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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