View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14152_low_5 (Length: 595)
Name: NF14152_low_5
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_5 |
 | |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 21 - 575
Target Start/End: Original strand, 165165 - 165735
Alignment:
| Q |
21 |
ataacttttgtatcaatacaatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaac |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
165165 |
ataacttttgtatcaatacaatgcagacttttgggagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaac |
165264 |
T |
|
| Q |
121 |
tgctcctgcacttgtaaaaggacatgatttcatcaagaaatctcaggtat----------------gcttaattttgatgacaaacatatgacatagtca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
165265 |
tgctcctgcacttgtaaaaggacatgatttcatcaagaaatctcaggtatgcttaattttgagtatgcttaattttgatgacaaacatatgacatagtca |
165364 |
T |
|
| Q |
205 |
caattctttccttcaaaataaggaaagtaaactcccaaatgaaccaatctagttaatgagatatgcaaggtcccatttatttattaaatgtaaggcctta |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
165365 |
caattctttccttcaaaataaggaaagtaaactcccaaatgaaccaatctagttaatgagatatgcaaggtcccatttatttattaaatgtaaggcctta |
165464 |
T |
|
| Q |
305 |
caagagtttattaagattcctcatctttacaaaatcagcttgaaagatgaggagtgcaactattgataaacccttgtcaggccttaccattaatctatgt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
165465 |
caagagtttattaagattcctcatctttacaaaatcagcttgcaagatgagtagtgcaactattgataaacccttgtcaggccttaccattaaactatgt |
165564 |
T |
|
| Q |
405 |
cggacttttgtttttctcaatgacacccaataggcctttgaacaataggtgtgctagctttatcttgcattgaaactgatactcttatttcacaggttag |
504 |
Q |
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|
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
165565 |
cggacttttgtttttctcaatgacgctcaataggcctttgaacaataggtgtgctagctttatcttgcattgaaaccgatactcttatttcacaggttag |
165664 |
T |
|
| Q |
505 |
ggacaacccttctggagatttcaagagtatgtatcgtcatatttctaaaggctcgtgtaccttctctgatc |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
165665 |
ggacaacccttctggagatttcaagagtatgtatcgtcatatttctaaaggctcgtggaccttctctgatc |
165735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 33 - 208
Target Start/End: Original strand, 104571 - 104746
Alignment:
| Q |
33 |
tcaatacaatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaactgctcctgcact |
132 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| || |||||||| ||||||||||||||||| | ||||||| ||| |||| | |||||||| |
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|
| T |
104571 |
tcaatacaatgcagagttttggtagccaagaatgggatgctggttttgccgttcaagctttgcttgccgctaacctaaatgatgaaatcgaacctgcact |
104670 |
T |
|
| Q |
133 |
tgtaaaaggacatgatttcatcaagaaatctcaggtatgcttaattttgatgacaaacatatgacatagtcacaat |
208 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | ||| ||||||| |
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|
| T |
104671 |
tgccaaaggacatgatttcattaagaaatctcaggtatgtttaattttgatgacaaacatataatataatcacaat |
104746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 436 - 575
Target Start/End: Original strand, 104966 - 105105
Alignment:
| Q |
436 |
aggcctttgaacaataggtgtgctagctttatcttgcattgaaactgatactcttatttcacaggttagggacaacccttctggagatttcaagagtatg |
535 |
Q |
| |
|
||||||||||||||| ||||| || |||| ||||||| ||||| | ||||||||||||||||||||| || ||||||||||||||||| ||||||||| |
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|
| T |
104966 |
aggcctttgaacaatgtgtgtgttatctttgtcttgcaatgaaagtaatactcttatttcacaggttacagagaacccttctggagattttaagagtatg |
105065 |
T |
|
| Q |
536 |
tatcgtcatatttctaaaggctcgtgtaccttctctgatc |
575 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| |||| |
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|
| T |
105066 |
catcgtcatatttctaaaggctcatggaccttctccgatc |
105105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 5669666 - 5669526
Alignment:
| Q |
40 |
aatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaactgctcctgcacttgtaaaa |
139 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||||||| |||| |||||||||||||||| ||||||| |||||| | || ||| |||| | |||| |
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|
| T |
5669666 |
aatgcagagttttggtagccaaacatgggatgctagtttgatcattgaagctttgcttgccactaacctaactgaggatattggtccaacactggcaaaa |
5669567 |
T |
|
| Q |
140 |
ggacatgatttcatcaagaaatctcaggtatgcttaatttt |
180 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
5669566 |
ggacatgaattcatcaagaaatctcaggtatgcttaatttt |
5669526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 5690323 - 5690183
Alignment:
| Q |
40 |
aatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaactgctcctgcacttgtaaaa |
139 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||| | || ||| |||||| |||| |
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|
| T |
5690323 |
aatgcagagttttggtagccaaacatgggatgctagtttgatcattcaagctttgcttgccactaacctaattgaggatattggtccaacacttgcaaaa |
5690224 |
T |
|
| Q |
140 |
ggacatgatttcatcaagaaatctcaggtatgcttaatttt |
180 |
Q |
| |
|
|||||| | ||||||||||| ||||||||||| ||| |||| |
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|
| T |
5690223 |
ggacataaattcatcaagaattctcaggtatgtttagtttt |
5690183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 5721920 - 5721780
Alignment:
| Q |
40 |
aatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaactgctcctgcacttgtaaaa |
139 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||| |||||| ||||||| | || | | |||||| |||| |
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|
| T |
5721920 |
aatgcagagttttggtagccaaacatgggatgctagtttcatcattcaagctttgcttgccactaacctagttgaggatattggttcaacacttgcaaaa |
5721821 |
T |
|
| Q |
140 |
ggacatgatttcatcaagaaatctcaggtatgcttaatttt |
180 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||| ||| |||| |
|
|
| T |
5721820 |
ggacatgaatacatcaagaattctcaggtatgtttagtttt |
5721780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 497 - 575
Target Start/End: Complemental strand, 5688595 - 5688517
Alignment:
| Q |
497 |
caggttagggacaacccttctggagatttcaagagtatgtatcgtcatatttctaaaggctcgtgtaccttctctgatc |
575 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| ||||| |||||||| || ||||| || || ||||||||||||| |
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|
| T |
5688595 |
caggttagggacaacccttcaggagattttgagagcatgtaccgtcatatctccaaagggtcatggaccttctctgatc |
5688517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 496 - 575
Target Start/End: Complemental strand, 5668806 - 5668727
Alignment:
| Q |
496 |
acaggttagggacaacccttctggagatttcaagagtatgtatcgtcatatttctaaaggctcgtgtaccttctctgatc |
575 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| ||||| |||||||| || ||||| || || ||||||||||||| |
|
|
| T |
5668806 |
acaggttagggacaacccttcaggagattatgagagcatgtaccgtcatatgtccaaagggtcatggaccttctctgatc |
5668727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 575
Target Start/End: Complemental strand, 5721333 - 5721255
Alignment:
| Q |
497 |
caggttagggacaacccttctggagatttcaagagtatgtatcgtcatatttctaaaggctcgtgtaccttctctgatc |
575 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| ||||| |||||||| || ||||| || || || |||||||||| |
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|
| T |
5721333 |
caggttagggacaacccttcaggagattttgagagcatgtaccgtcatatctccaaagggtcatggacattctctgatc |
5721255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 34 - 170
Target Start/End: Complemental strand, 12137042 - 12136906
Alignment:
| Q |
34 |
caatacaatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaactgctcctgcactt |
133 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||||| | |||||||||||||| |||||||||| | ||| |||| ||||||| || |||||||||| |
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|
| T |
12137042 |
caatataatgcagagttttggtagccaaaaatgggatgttggttttgccattcaaactttgcttgcgtctaacttaatcgaggaaattggtcctgcactt |
12136943 |
T |
|
| Q |
134 |
gtaaaaggacatgatttcatcaagaaatctcaggtat |
170 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12136942 |
gcaaaagcacatgatttcatcaagaaatctcaggtat |
12136906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 575
Target Start/End: Complemental strand, 12136810 - 12136723
Alignment:
| Q |
488 |
cttatttcacaggttagggacaacccttctggagatttcaagagtatgtatcgtcatatttctaaaggctcgtgtaccttctctgatc |
575 |
Q |
| |
|
|||||||| ||||| | ||||||||||| |||||||| ||||||||| |||||||||||||||||||||| || |||||||| |||| |
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|
| T |
12136810 |
cttatttcttaggttcgagacaacccttcaggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatc |
12136723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 483 - 575
Target Start/End: Complemental strand, 91765 - 91673
Alignment:
| Q |
483 |
atactcttatttcacaggttagggacaacccttctggagatttcaagagtatgtatcgtcatatttctaaaggctcgtgtaccttctctgatc |
575 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||||| |||| |
|
|
| T |
91765 |
atactcttatttctcaggttagcgacaacccttctggagattttaagagtatgtatcgtcatatttctaaaggttcatggaccttctccgatc |
91673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 91970 - 91815
Alignment:
| Q |
26 |
ttttgtatcaatacaatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaactgctc |
125 |
Q |
| |
|
|||| ||||||||||| |||| ||| |||||||||| |||| ||||||||||| | ||||||||||||||||||| ||||| |||||||| || | |
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|
| T |
91970 |
ttttctatcaatacaactcagagtttgggtagccaaggatggaatactagtttttctgttcaagctttgcttgccactggcctaactgaggaaattggcc |
91871 |
T |
|
| Q |
126 |
ctgcacttgtaaaaggacatgatttcatcaagaaatctcaggtatgcttaattttg |
181 |
Q |
| |
|
| | ||||| ||||| |||||||||||||||||||| |||||| | ||||||||| |
|
|
| T |
91870 |
cagtacttgcgaaaggtcatgatttcatcaagaaatcacaggtaagtttaattttg |
91815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 36 - 170
Target Start/End: Original strand, 13053143 - 13053277
Alignment:
| Q |
36 |
atacaatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaactgctcctgcacttgt |
135 |
Q |
| |
|
|||||||| ||| ||||||||| |||| ||||||| | ||||||| ||||||||||||||||||| ||| ||||||| |||| || ||||||||||| |
|
|
| T |
13053143 |
atacaatgtagagttttggtagtcaagaatgggatgcaggttttgctgttcaagctttgcttgccacaaacttaattgaagaaattggtcctgcacttgc |
13053242 |
T |
|
| Q |
136 |
aaaaggacatgatttcatcaagaaatctcaggtat |
170 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||| |
|
|
| T |
13053243 |
cagaggacatgacttcatcaagaaatctcaggtat |
13053277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 475 - 555
Target Start/End: Original strand, 13053518 - 13053598
Alignment:
| Q |
475 |
tgaaactgatactcttatttcacaggttagggacaacccttctggagatttcaagagtatgtatcgtcatatttctaaagg |
555 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
13053518 |
tgaaactgatacttttatttcacaggttagagacaacccttcaggagattttaagagtatgcatcgtcatatttctaaagg |
13053598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 12124713 - 12124749
Alignment:
| Q |
324 |
ctcatctttacaaaatcagcttgaaagatgaggagtg |
360 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
12124713 |
ctcatccttacaaaatcagcttgtaagatgaggagtg |
12124749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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