View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_50 (Length: 268)
Name: NF14152_low_50
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 27756626 - 27756854
Alignment:
| Q |
20 |
cttcttaggattttttcgacttgttacaacaactggtgtggattatcaggtgggattatactcattgagattcttagaaatttgtgtcaacaaacgtttt |
119 |
Q |
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| T |
27756626 |
cttcttaggattttttcgacttgttacaacaactggtgtggattatcaggtaggattatactcattgagattcttagaaatttgtgtcaacaaacatttc |
27756725 |
T |
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| Q |
120 |
gacatgcatctactaatactgcatcgtattaaactttaacaa-tataatcgcacatgtgtttttgaaatttccatcaactctgtgtataatcacacatgt |
218 |
Q |
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| T |
27756726 |
gacatgcatct---------------tattaaactttaacaagtataatcgcacatgtgtttttgaaatttctatcaactctatgtttaatcccacatgt |
27756810 |
T |
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| Q |
219 |
taaatgatgtag-tttccaagactataataatctgacccctatg |
261 |
Q |
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| T |
27756811 |
taaatgatgtagttttccaagactataataatctgacccctatg |
27756854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 24167500 - 24167599
Alignment:
| Q |
20 |
cttcttaggattttttcg-acttgttacaacaactggtgtggattatcaggtgggattatactcattgagattcttagaaatttgtgtcaacaaacgttt |
118 |
Q |
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| T |
24167500 |
cttcttaggatttttttttacttgttacaacaattggtgtggattatcaggtgggattatattcattgatattcttagaaa-ttgagtcaacaaacattt |
24167598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 46225837 - 46225739
Alignment:
| Q |
20 |
cttcttaggattttttcgacttgttacaacaactggtgtggattatcaggtgggattatactcattgagattcttagaaatttgtgtcaacaaacgtttt |
119 |
Q |
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| T |
46225837 |
cttcttgggattttcttaacctgttacaacaattggtgtggattatcaggtgggattatattcattgatattcttagaaa-ttgagtcaacaaacatttt |
46225739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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