View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_62 (Length: 228)
Name: NF14152_low_62
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_62 |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 41004362 - 41004558
Alignment:
| Q |
12 |
aaatatagtacataaaaccttcaaattgatgtaaggtcatacatgaaattattccctgttaggaaatcagacataatgattttattcggttgtaaagtta |
111 |
Q |
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| T |
41004362 |
aaatatagtacataaaaccttcaaattggtgtaaggtcatacatgaaattattccctgttaggaaatcagacataatgattttatttggttgtaaagtca |
41004461 |
T |
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| Q |
112 |
tacatagaaacaatttgactatccaacatagagtattagttatgaatgtaaggtctatgaagagattgaagataagaagacaaagtcgaattccaag |
208 |
Q |
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| T |
41004462 |
tacatagagacaatttgactatccaacatagagtattagttatggatgtaaggtctatgaagagattgaagataagaagacacagtcgaattccaag |
41004558 |
T |
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Target: scaffold0017 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 188365 - 188305
Alignment:
| Q |
104 |
taaagttatacatagaaacaatttgactatccaacatagagtattagttatgaatgtaagg |
164 |
Q |
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| T |
188365 |
taaagttttacatagaaagagtttgactatccaacataaaatattggttatggatgaaagg |
188305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 21068454 - 21068514
Alignment:
| Q |
104 |
taaagttatacatagaaacaatttgactatccaacatagagtattagttatgaatgtaagg |
164 |
Q |
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| T |
21068454 |
taaagttttacatggagagagtttgactatccaacatatagtattggttatggatgtaagg |
21068514 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 27511183 - 27511143
Alignment:
| Q |
125 |
tttgactatccaacatagagtattagttatgaatgtaaggt |
165 |
Q |
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| T |
27511183 |
tttgactatccaacatatagtattggttatggatgtaaggt |
27511143 |
T |
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