View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_63 (Length: 225)
Name: NF14152_low_63
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 42638946 - 42639142
Alignment:
| Q |
17 |
tatgatatcatttattcaaatatatataccaagtat----tgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactac |
112 |
Q |
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| T |
42638946 |
tatgatatcatttattcaaatatatatactaagtatatattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactac |
42639045 |
T |
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| Q |
113 |
aatattgagtgtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaa |
209 |
Q |
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| T |
42639046 |
aatattgagtgtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaa |
42639142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 42628384 - 42628543
Alignment:
| Q |
50 |
tattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgt |
149 |
Q |
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| T |
42628384 |
tattgtatggattgctagcttagaaagtaagcttatcaccaggagcaacacccaattgactacaatattgagtgtagcaaccaacacgagtctgaactgt |
42628483 |
T |
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| Q |
150 |
ggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaa |
209 |
Q |
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| T |
42628484 |
agttggcttagcaccatcacattcaagtcgaccattaatggctctagtggttgcaccaaa |
42628543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 42633903 - 42634062
Alignment:
| Q |
50 |
tattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgt |
149 |
Q |
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| T |
42633903 |
tattgtatggattgctagcttagcagttaagcttatcaccaggagcaacacccagttgactacaatattgagtgtagtaatcaacacgagccttaactgt |
42634002 |
T |
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| Q |
150 |
ggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaa |
209 |
Q |
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| T |
42634003 |
gttggggtcaacaccgtcacattcaagtcgaccattaatggctctaaccgttgcaccaaa |
42634062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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