View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_68 (Length: 207)
Name: NF14152_low_68
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_68 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 9299589 - 9299439
Alignment:
| Q |
1 |
catctgctccagttgtgcttttagttctgagttcttgctcacaactaattctacttctttaatcttttgttccctgcaatttgcaacattaatttaaagc |
100 |
Q |
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| T |
9299589 |
catctgcttcagttgtgcttttagttctgagttcttgctcacaactaattctacttctttaatcttttgttccctgcaatttgcaacattaatttaaagc |
9299490 |
T |
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| Q |
101 |
cacaattgtttttcacaaagtaaatactacctccgtctttaattataagac |
151 |
Q |
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| T |
9299489 |
cataattgtttttcacaaagtaaatactacctccgtctttaattataagac |
9299439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 9301796 - 9301692
Alignment:
| Q |
1 |
catctgctccagttgtgcttttagttctgagttcttgctcacaactaattctacttctttaatcttttgttccctgcaatttgcaacattaatttaaagc |
100 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |
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| T |
9301796 |
catctgctccagttgtgcttttagttctgaattctctctcacaactaattctacttctttaatattttgctccctgcaaattgcaacattaatttaaagc |
9301697 |
T |
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| Q |
101 |
cacaa |
105 |
Q |
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|||| |
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| T |
9301696 |
tacaa |
9301692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1116418 - 1116350
Alignment:
| Q |
1 |
catctgctccagttgtgcttttagttctgagttcttgctcacaactaattctacttctttaatcttttg |
69 |
Q |
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| T |
1116418 |
catctgctctagttgtgcttttagttctgaattctcgctcagaactaagtctacttctttaatcttttg |
1116350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 43187833 - 43187905
Alignment:
| Q |
1 |
catctgctccagttgtgcttttagttctgagttcttgctcacaactaattctacttctttaatcttttgttcc |
73 |
Q |
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||||||||||||||||||||| |||||||| |||| ||| | ||||||||||||||| ||||||||||||||| |
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| T |
43187833 |
catctgctccagttgtgctttcagttctgaattctcgctgataactaattctacttcattaatcttttgttcc |
43187905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 151
Target Start/End: Original strand, 12360455 - 12360483
Alignment:
| Q |
123 |
aatactacctccgtctttaattataagac |
151 |
Q |
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| T |
12360455 |
aatactacctccgtctttaattataagac |
12360483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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