View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14152_low_7 (Length: 527)
Name: NF14152_low_7
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 12 - 510
Target Start/End: Complemental strand, 47609559 - 47609061
Alignment:
| Q |
12 |
gattattcttatttgaatatcaggtaacaattaaaatcatttaagttgttaaactcttctattaacatcattaaggaaaagtaaagacagatgaactaag |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47609559 |
gattattcttatttgaatataaggtaacaatgaaaatcatttaagttgttaaactcttctattaacatcattaaggaaaagtaaagacagatgaactaag |
47609460 |
T |
|
| Q |
112 |
cttttctcagatattttacttgtgatttataacctcatttattgaatttttgtttgataaattctctgtataattgagctttgggtcagttctattcaaa |
211 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47609459 |
ctttgctcggatattttacttgtgatttataacctcatttattgaatttttgtttgataaattctctgtataattgagctttgggttagttctattcaaa |
47609360 |
T |
|
| Q |
212 |
atgtgcttgcaatattatgtagttgcttatgatgaatttttgagttactagagagatgtttgacttagttcttggttttgtttcctctgcgtgatatgct |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47609359 |
atgtgcttgcaatattatgtagttgcttatgatgaatttttgagttactagagagatgtttgacttagttcttggttttgtttcctctgtgtgatatgct |
47609260 |
T |
|
| Q |
312 |
atttcttttagcaactgaccgaattattggcttgtttggttatgcgacacttcaagaaaaatcacgttaaaaattcacatcaaagcaaaagctcgtattt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47609259 |
atttcttttagcaactgaccgaattattggcttgtttggttatgcggcacttcaggaaaaatcacgttaaaaattcacatcaaagcaaaagcttgtattt |
47609160 |
T |
|
| Q |
412 |
gtagcttcatagtttccatgttgaaattacattgggacgtggtatttgtgtcttaaaatctaatccaaacactcactatatatctcttaatctcgttgt |
510 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47609159 |
gtagcttcatagtttccacattgaaattgcattgggacgtagtatttgtgtcttaaaatctaatccaaacactcactatatatctcttaatctcgttgt |
47609061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 180 - 312
Target Start/End: Complemental strand, 47604893 - 47604761
Alignment:
| Q |
180 |
tataattgagctttgggtcagttctattcaaaatgtgcttgcaatattatgtagttgcttatgatgaatttttgagttactagagagatgtttgacttag |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47604893 |
tataattgagctttgggtcagttctattcaaaatgtgcttgcaatattatttagttgcttatgatgaatttttgagttactagagagatgtttgacttag |
47604794 |
T |
|
| Q |
280 |
ttcttggttttgtttcctctgcgtgatatgcta |
312 |
Q |
| |
|
||||||||||||||||||||| || |||||||| |
|
|
| T |
47604793 |
ttcttggttttgtttcctctgtgttatatgcta |
47604761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 339 - 444
Target Start/End: Complemental strand, 19112684 - 19112579
Alignment:
| Q |
339 |
tggcttgtttggttatgcgacacttcaagaaaaatcacgttaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaat |
438 |
Q |
| |
|
||||||| ||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||| |
|
|
| T |
19112684 |
tggcttgcttggttatgcggcacatcaaggaaaatcacgttaaaaaatcacatcaaagcaaaagctcatatttgtagcttcataatttccaagttgaaat |
19112585 |
T |
|
| Q |
439 |
tacatt |
444 |
Q |
| |
|
| |||| |
|
|
| T |
19112584 |
tgcatt |
19112579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 19991472 - 19991412
Alignment:
| Q |
234 |
ttgcttatgatgaatttttgagttactagagagatgtttgacttagttcttggttttgttt |
294 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |
|
|
| T |
19991472 |
ttgcatataatgaatttttgagttactagaaagatgcttgactttgttcttagttttgttt |
19991412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 19930102 - 19930179
Alignment:
| Q |
102 |
atgaactaagcttttctcagatattttact--tgtgatttataacct-catttattgaatttttgtttgataaattct |
176 |
Q |
| |
|
||||||||| |||| || |||||||||||| | |||| |||||||| |||||||||| |||||||||||| |||||| |
|
|
| T |
19930102 |
atgaactaatctttgctaagatattttactcttatgatatataaccttcatttattgagtttttgtttgattaattct |
19930179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 351 - 488
Target Start/End: Original strand, 19155022 - 19155159
Alignment:
| Q |
351 |
ttatgcgacacttcaagaaaaatcacgttaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaattacattgggacg |
450 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||| || ||||| | |
|
|
| T |
19155022 |
ttatgcgacatttcaagaaaaattacgttaaaaattcacatcaaagcaaaagcttataattatagcttcatagtttccacgttgaaattgcaatgggagg |
19155121 |
T |
|
| Q |
451 |
tggtatttgtgtcttaaaatctaatccaaacactcact |
488 |
Q |
| |
|
||||||||| ||| |||| || |||||||||| |||| |
|
|
| T |
19155122 |
tggtatttgcgtcagaaaaactgatccaaacacccact |
19155159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 369 - 489
Target Start/End: Original strand, 36903636 - 36903756
Alignment:
| Q |
369 |
aaaatcacgttaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaattacattgggacgtggtatttgtgtcttaaa |
468 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||| |||||||||||||||| |||||| || ||||| |||||||| |||||||| || || ||| |
|
|
| T |
36903636 |
aaaatcacgttagaaaatcacatcaaagcaaaagcttatatttgtagcttcataatttccaaattaaaattgcattgggaagtggtattcgtatcccaaa |
36903735 |
T |
|
| Q |
469 |
atctaatccaaacactcacta |
489 |
Q |
| |
|
| ||||| |||||||||||| |
|
|
| T |
36903736 |
agttaatcgaaacactcacta |
36903756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 372 - 486
Target Start/End: Complemental strand, 20909287 - 20909175
Alignment:
| Q |
372 |
atcacgttaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaattacattgggacgtggtatttgtgtcttaaaatc |
471 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| |||||||||| ||||| ||| || ||| ||||| |||||| | |||||||||||||| ||| | |
|
|
| T |
20909287 |
atcacgttaaaaaatcacatcaaaggaaaagcttatatttgtagc-tcataattt-caagttaaaattgcattggaaagtggtatttgtgtcgcaaaggc |
20909190 |
T |
|
| Q |
472 |
taatccaaacactca |
486 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
20909189 |
tgatccaaacactca |
20909175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 341 - 487
Target Start/End: Original strand, 33765004 - 33765150
Alignment:
| Q |
341 |
gcttgtttggttatgcgacacttcaagaaaaatcacgttaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaatta |
440 |
Q |
| |
|
||||||||||||||| | || ||||| ||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| |
|
|
| T |
33765004 |
gcttgtttggttatgtggcaggtcaagtaaaattactttaaaaattcacatcaaagcaaaagctcagatttgtagcttcatagttttcacgttgaaattg |
33765103 |
T |
|
| Q |
441 |
cattgggacgtggtatttgtgtcttaaaatctaatccaaacactcac |
487 |
Q |
| |
|
||||||||||||||||| |||| |||| || |||||||| ||||| |
|
|
| T |
33765104 |
tattgggacgtggtatttatgtcccaaaagctgatccaaacgctcac |
33765150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 463
Target Start/End: Original strand, 13876788 - 13876882
Alignment:
| Q |
369 |
aaaatcacgttaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaattacattgggacgtggtatttgtgtc |
463 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||| |||||||| ||||||| |||||| || ||||| ||||| || |||||||||||||| |
|
|
| T |
13876788 |
aaaatcacgttaaaaaatcatataaaagcaaaagcttatatttgtaacttcataatttccaaattaaaattgcattgagaagtggtatttgtgtc |
13876882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 331
Target Start/End: Complemental strand, 4287778 - 4287698
Alignment:
| Q |
249 |
ttttgagttactagagagatgtttgacttagttcttggttttgtttcctctgcgtgatatgctatttcttttagcaactgacc |
331 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||| || |||||| | | ||||||||||| ||||||||| ||||| |
|
|
| T |
4287778 |
ttttgatttactagagagatgtttgactttgttcttgggttgttttccttt--ctcatatgctatttgttttagcaattgacc |
4287698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 435
Target Start/End: Complemental strand, 11016928 - 11016847
Alignment:
| Q |
354 |
tgcgacacttcaagaaaaatcacgttaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttga |
435 |
Q |
| |
|
||||||| ||||| ||||||||||| |||| ||||||||||||||||||| |||||||||||||||| ||| || ||||| |
|
|
| T |
11016928 |
tgcgacatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagctaatatttgtagcttcataattttcaagttga |
11016847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University