View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_8 (Length: 527)
Name: NF14152_low_8
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 510
Target Start/End: Complemental strand, 26072814 - 26072326
Alignment:
| Q |
19 |
atggcattaactatgaaagctaaatttgaaaagtattggagtgatgagaatatcaataatctgttgtttgtagctgtttatcttgatcctaggtacaaga |
118 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26072814 |
atggcattgactatgaaagctaaatttgaaaagtattggagtgatgagaatatcaattatctgttgtttgtagctgtttatcttgatcctaggtacaaga |
26072715 |
T |
|
| Q |
119 |
tggagtatcttgatttgtgttttggttggatgtatggggtggaaaaggctaaaatgatcattgctaaactgcatgaactcataggcaaattgtttgatta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26072714 |
tggagtatcttgatttgtgttttggttggatgtatggggtggaaaaggctaaaatgataattgctaaactgcatgaactcataggcaaattgtttgatta |
26072615 |
T |
|
| Q |
219 |
ttacaagtcactgcggcctattggttttgtttctagtgattcctcctctagctccattaatacaatacaaagtgatgttgttattactttgggtgttgga |
318 |
Q |
| |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||| |
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| T |
26072614 |
ttacaagtcagtgcagcctattggttttgtttctagtgattcctcctctagctccactaatacaatgcaaagtgatgttg---ttactttcggtgttgga |
26072518 |
T |
|
| Q |
319 |
ggtaatgtggatatggatgctttacaccgaagaagggttaaaagaaggcaaagtgaacataaatcaagtgagttggttagatacttagaagatgaggttg |
418 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
26072517 |
ggtaatgtggatatggatgctttgcaccgaagaagggttaaaagaaggcaaagtgaacataactcaagtgagttggtaagatacttagaagatgaggttg |
26072418 |
T |
|
| Q |
419 |
aagatgattatgaaggatttgaacttttgaaatggtggaaaagtaagagcacaaagtacattgttctttctctcatggctagggatatatta |
510 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26072417 |
aagatgattatgaatgatttgaacttttgaaatggtggaaaagtaagagcacaaagtacattgttctttctctcatggctagggatatatta |
26072326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Original strand, 1670888 - 1671377
Alignment:
| Q |
19 |
atggcattaactatgaaagctaaatttgaaaagtattggagtgatgagaatatcaataatctgttgtttgtagctgtttatcttgatcctaggtacaaga |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1670888 |
atggcattgactatgaaagctaaatttgaaaagtattggagtgatgagaatatcaattatctgttgtttgtagctgtttatcttgatcctaggtacaaga |
1670987 |
T |
|
| Q |
119 |
tggagtatcttgatttgtgttttggttggatgtatggggtggaaaaggctaaaatgatcattgctaaactgcatgaactcataggcaaattgtttgatta |
218 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1670988 |
tggagtatcttgatttttgttttggttggatgtatggggtggaaaaggctaaaatgataattgctaaactgcatgaactcataggcaaattgtttgatta |
1671087 |
T |
|
| Q |
219 |
ttacaagtcactgcggcctattggttttgtttctagtgattcctcctctagctccattaatacaatacaaagtgatgttgttattactttgggtgttgga |
318 |
Q |
| |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||| |
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| T |
1671088 |
ttacaagtcagtgcagcctattggttttgtttctagtgattcctcctctagctccactaatacaatgcaaagtgatgttg---ttactttcggtgttgga |
1671184 |
T |
|
| Q |
319 |
ggtaatgtggatatggatgctttacaccgaagaagggttaaaagaaggcaaagtgaacataaatcaagtgagttggttagatacttagaagatgaggttg |
418 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
1671185 |
ggtaatgtggatatggatgctttgcaccgaagaagggttaaaagaaggcaaagtgaacataactcaagtgagttggtaagatacttagaagatgaggttg |
1671284 |
T |
|
| Q |
419 |
aagatgattatgaaggatttgaacttttgaaatggtggaaaagtaagagcacaaagtacattgttctttctctcatggctagggatatattat |
511 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
1671285 |
aagatgattatgaaggatttgaacatttgaaatggtggaaaagtaagagcacaaagtacattgttctttctctcatagctagggatatattat |
1671377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 510
Target Start/End: Complemental strand, 44271591 - 44271114
Alignment:
| Q |
19 |
atggcattaactatgaaagctaaatttgaaaagtattggagtgatgagaatatcaataatctgttgtttgtagctgtttatcttgatcctaggtacaaga |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
44271591 |
atggcattgactatgaaagctaaatttgaaaagtattggagtgatgagaatatcaattatctgttgtttgtagctgtttatattgatcctaggtacaaga |
44271492 |
T |
|
| Q |
119 |
tggagtatcttgatttgtgttttggttggatgtatggggtggaaaaggctaaaatgatcattgctaaactgcatgaactcataggcaaattgtttgatta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||| |||| |||| |||| || | ||||| ||||||| ||||||||||||| |
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|
| T |
44271491 |
tggagtatcttgatttgtgttttggttggatgtatggaaagnaaa-ggctgcc-tgataattga-aacccgcatgc-ctcatagc--aattgtttgatta |
44271398 |
T |
|
| Q |
219 |
ttacaagtcactgcggcctattggttttgtttctagtgattcctcctctagctccattaatacaatacaaagtgatgttgttattactttgggtgttgga |
318 |
Q |
| |
|
|| ||||||| | ||||||| |||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||| |||| ||||||||| |
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|
| T |
44271397 |
tt-caagtca--ggcacctattg-ttttgtttctagtg-ttcctactctagctccactaatacaatgcaaagtgatgttgtta---ctttcggtgttgga |
44271306 |
T |
|
| Q |
319 |
ggtaatgtggatatggatgctttacaccgaagaagggttaaaagaaggcaaagtgaacataaatcaagtgagttggttagatacttagaagatgaggttg |
418 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |
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|
| T |
44271305 |
ggtaatgtggatatggatgctttgcaccgaagaagggttaaaagaaggcaaagtgaacataactcaagttagttggtaagatacttagaagatgaggttg |
44271206 |
T |
|
| Q |
419 |
aagatgattatgaaggatttgaacttttgaaatggtggaaaagtaagagcacaaagtacattgttctttctctcatggctagggatatatta |
510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44271205 |
aagatgattatgaaggatttgaacttttgaaatggtggaaaagtaagagcacaaagtacattgttctttctctcatggctagggatatatta |
44271114 |
T |
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