View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14152_low_9 (Length: 523)
Name: NF14152_low_9
Description: NF14152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14152_low_9 |
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| [»] scaffold0603 (1 HSPs) |
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| [»] scaffold1301 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 507
Target Start/End: Complemental strand, 11498185 - 11497696
Alignment:
| Q |
18 |
cttctaaggtgcagaaatatctttcttctcctttcaacccgtttaatgaagcgattaattgtaaattgctaaaattaactcaaagattagaacgcttgac |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11498185 |
cttctaaggtgctgaaatatctttcttctcctttcaacccgtttaatgaagcgattaactgtaaattgctaaaattaactcaaagattagaacgcttgac |
11498086 |
T |
|
| Q |
118 |
ttccagcaatgttttgcgtggaactcgtagaagttctcctttggttgatgaatcttctatttatggaagagacagtgataaagagaaacttaaacatctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11498085 |
ttccagcaatgttttgcgtggaactcgtagaagttctcctttggttgatgaatcttctatttatggaagagacagtgataaagagaaacttaaacatctt |
11497986 |
T |
|
| Q |
218 |
ttgttgtctagtgattgtgatgataatcaagtacaaattatttcaatcgtgggtattgaagggattggtaaaactacctttgcagaactcctttataacg |
317 |
Q |
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||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11497985 |
ttgttgtctagtgattgtgatgatagtcaaatacgaattatttcaatcgtgggtattgaagggattggtaaaactacctttgcagaactcctttataacg |
11497886 |
T |
|
| Q |
318 |
atcctgaagtaaatgacaaatttgagttcaaactatgggagtatatctcaactgattttggtattttaaagttttgtgaaaccattcttgaatatattac |
417 |
Q |
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| T |
11497885 |
atcctgaagtaaatgacaaatttgagttcaaactatgggagtatatctcaactgattttggtattttaaagttttgtgaaaccattcttgaatatattac |
11497786 |
T |
|
| Q |
418 |
tttacaaacaattagttgtgacaatatgaaaccaannnnnnngttagtattggatggggccttgggagtatgttctgtcgactggatatt |
507 |
Q |
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| T |
11497785 |
ttcacaaacaattagttgtgacaatatgaaaccaatttttttgttagtattggatggggccttgggtgtatgttctgtcgactggatatt |
11497696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 163 - 300
Target Start/End: Original strand, 5965466 - 5965603
Alignment:
| Q |
163 |
tgatgaatcttctatttatggaagagacagtgataaagagaaacttaaacatcttttgttgtctagtgattgtgatgataatcaagtacaaattatttca |
262 |
Q |
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||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| |||||||| | || || ||||||||| |
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| T |
5965466 |
tgatgaatcttgtatttatggaagagacaatgatataaagaaacttaaacatcttttgttgtctagtgacggtgatgatggtaaaataggaattatttcc |
5965565 |
T |
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| Q |
263 |
atcgtgggtattgaagggattggtaaaactacctttgc |
300 |
Q |
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|| |||||||||||||||||||||||||| ||| |||| |
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| T |
5965566 |
attgtgggtattgaagggattggtaaaacaacccttgc |
5965603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 356
Target Start/End: Original strand, 5051544 - 5051725
Alignment:
| Q |
172 |
ttctatttatggaagagacagtgataaagagaaacttaaacatcttttgttgtctagtgattgtgatgataatcaagtacaaattatttcaatcgtgggt |
271 |
Q |
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|||||||||| ||||| ||| |||| | ||||||||||||||||||| || |||| |||| | |||||| ||| || ||||||||| |||||||| |
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| T |
5051544 |
ttctatttatagaagaaacaatgatgtaaagaaacttaaacatcttttattttctaatgatggagatgat---caaataagaattatttccatcgtggga |
5051640 |
T |
|
| Q |
272 |
attgaagggattggtaaaactacctttgcagaactcctttataacgatcctgaagtaaatgacaaatttgagttcaaactatggg |
356 |
Q |
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|| | ||||||||||||||| || |||| |||||||||| ||||||||| | ||||| |||||||||||||| ||||| |||| |
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| T |
5051641 |
atggtagggattggtaaaacagcccttgctaaactcctttacaacgatcctcatgtaaaggacaaatttgagttaaaactgtggg |
5051725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 2919166 - 2919246
Alignment:
| Q |
157 |
tttggttgatgaatcttctatttatggaagagacagtgataaagagaaacttaaacatcttttgttgtctagtgattgtga |
237 |
Q |
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||||| ||||||||||| ||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||| |||| |
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| T |
2919166 |
tttggctgatgaatcttgtatttatggtagagatagtgataaaaacaaacttaaacatcttttgttgtctagtgatagtga |
2919246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 429
Target Start/End: Complemental strand, 11491471 - 11491346
Alignment:
| Q |
304 |
actcctttataacgatcctgaagtaaatgacaaatttgagttcaaactatgggagtatatctcaactgattttggtattttaaagttttgtgaaaccatt |
403 |
Q |
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||||||||| ||||| ||||||||| ||||||||||||| || ||| | ||| |||||| |||| |||||||| |||||| | | ||| |||||||||| |
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| T |
11491471 |
actcctttacaacgaccctgaagtacatgacaaatttgaattaaaattgtggaggtatatttcaaatgattttgatattttcagggtttatgaaaccatt |
11491372 |
T |
|
| Q |
404 |
cttgaatatattactttacaaacaat |
429 |
Q |
| |
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|| |||| |||||||| ||||||||| |
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| T |
11491371 |
ctagaatctattacttcacaaacaat |
11491346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 7492716 - 7492660
Alignment:
| Q |
175 |
tatttatggaagagacagtgataaagagaaacttaaacatcttttgttgtctagtga |
231 |
Q |
| |
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||||||||||||||||||||||| | ||||||||||| ||| ||||||||||||||| |
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| T |
7492716 |
tatttatggaagagacagtgatataaagaaacttaaaaatcctttgttgtctagtga |
7492660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 164 - 377
Target Start/End: Original strand, 16446439 - 16446652
Alignment:
| Q |
164 |
gatgaatcttctatttatggaagagacagtgataaagagaaacttaaacatcttttgttgtctagtgattgtgatgataatcaagtacaaattatttcaa |
263 |
Q |
| |
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|||||||||||||||||||||||||| ||||| | ||||||||||||||||||| || |||| || || |||| ||| | ||||| ||||||||| | |
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| T |
16446439 |
gatgaatcttctatttatggaagagatgatgatagaaagaaacttaaacatcttttattatctactggttttgataatagtaaagtaggaattatttcca |
16446538 |
T |
|
| Q |
264 |
tcgtgggtattgaagggattggtaaaactacctttgcagaactcctttataacgatcctgaagtaaatgacaaatttgagttcaaactatgggagtatat |
363 |
Q |
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| |||||||| | ||||||||||||||| || |||| |||| ||||| | ||||| ||||||| || ||||||||||| ||||| |||| |||| |
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| T |
16446539 |
ttgtgggtatgggagggattggtaaaacatcccttgctaaactgctttactatgatcccgaagtaagagaaaaatttgagttaaaactgtgggcaaatat |
16446638 |
T |
|
| Q |
364 |
ctcaactgattttg |
377 |
Q |
| |
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||||| || ||||| |
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| T |
16446639 |
ctcaaatgcttttg |
16446652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 291
Target Start/End: Original strand, 17311392 - 17311520
Alignment:
| Q |
163 |
tgatgaatcttctatttatggaagagacagtgataaagagaaacttaaacatcttttgttgtctagtgattgtgatgataatcaagtacaaattatttca |
262 |
Q |
| |
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||||||||||| ||||||||||||||| | ||||| | |||||||| ||||||||||||| |||||||| |||||||| |||| || | ||||||| |
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| T |
17311392 |
tgatgaatcttgtatttatggaagagagaatgatatgaacaaacttaaccatcttttgttgtttagtgattttgatgatagtcaaataagagttatttcc |
17311491 |
T |
|
| Q |
263 |
atcgtgggtattgaagggattggtaaaac |
291 |
Q |
| |
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|| |||||||| | ||||||||||||||| |
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| T |
17311492 |
attgtgggtatgggagggattggtaaaac |
17311520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 345
Target Start/End: Complemental strand, 5264 - 5089
Alignment:
| Q |
170 |
tcttctatttatggaagagacagtgataaagagaaacttaaacatcttttgttgtctagtgattgtgatgataatcaagtacaaattatttcaatcgtgg |
269 |
Q |
| |
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|||||||||||||||||||||| ||||| || |||||||||||||||| |||||| ||| ||||||||| | || ||| ||| ||||| || || | |
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| T |
5264 |
tcttctatttatggaagagacaatgatattaaggaacttaaacatcttttattgtctgaagatggtgatgatagtaaaatacgaatcatttccattgttg |
5165 |
T |
|
| Q |
270 |
gtattgaagggattggtaaaactacctttgcagaactcctttataacgatcctgaagtaaatgacaaatttgagtt |
345 |
Q |
| |
|
|||| | |||||| |||||||| ||| |||| | | ||||| |||||| | |||||| |||||||||||||||| |
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| T |
5164 |
gtatagcagggatcggtaaaacaacccttgctaaggttctttacaacgataccgaagtacatgacaaatttgagtt |
5089 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 341
Target Start/End: Original strand, 18387589 - 18387780
Alignment:
| Q |
150 |
gttctcctttggttgatgaatcttctatttatggaagagacagtgataaagagaaacttaaacatcttttgttgtctagtgattgtgatgataatcaagt |
249 |
Q |
| |
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||||| || |||||||| || ||||||||||||||||||||| ||||| | | ||||||||||||||||| |||| || ||| ||||||||| | || |
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| T |
18387589 |
gttctgctgtggttgataaaacttctatttatggaagagacaatgatataaacaaacttaaacatcttttattgtataatgacagtgatgatagtaaaac |
18387688 |
T |
|
| Q |
250 |
acaaattatttcaatcgtgggtattgaagggattggtaaaactacctttgcagaactcctttataacgatcctgaagtaaatgacaaatttg |
341 |
Q |
| |
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| || |||||| || |||||||| | ||||||||||||||| || ||||| | ||||||| || ||||| || || || |||||||||| |
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| T |
18387689 |
aagaactatttccattgtgggtatggcagggattggtaaaacagcccttgcaaatttcctttacaatgatccagatgttaaggacaaatttg |
18387780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1301 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold1301
Description:
Target: scaffold1301; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 151 - 70
Alignment:
| Q |
159 |
tggttgatgaatcttctatttatggaagagacagtgataaagagaaacttaaacatcttttgttgtctagtgattgtgatga |
240 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| | | ||||||||||||||||| ||||||| ||| ||||||| |
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|
| T |
151 |
tggttgatgaatcttgtatttatggaagagacaatgatataaacaaacttaaacatcttttattgtctaatgacggtgatga |
70 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 5988098 - 5988160
Alignment:
| Q |
163 |
tgatgaatcttctatttatggaagagacagtgataaagagaaacttaaacatcttttgttgtc |
225 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||| | ||||||||||| |||||||| |||| |
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| T |
5988098 |
tgataaatcttctatttatggaagagacaatgatataaagaaacttaaaaatcttttgctgtc |
5988160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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