View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14153_high_2 (Length: 449)

Name: NF14153_high_2
Description: NF14153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14153_high_2
NF14153_high_2
[»] chr1 (4 HSPs)
chr1 (147-449)||(32597333-32597627)
chr1 (12-146)||(32597156-32597297)
chr1 (207-330)||(32577320-32577449)
chr1 (264-314)||(32613843-32613893)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 147 - 449
Target Start/End: Original strand, 32597333 - 32597627
Alignment:
Q  147 tctagcaaaatcaagat--gttccccccactatgttttgaacgatccgctgagtacatatattattagtattggagtaaacaaacattttggtccttaaa 244  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32597333 tctaccaaaatcaagatatgttccccccactatgttttgaacgatccgctgagtacatatattattagtattggagtaaacaaccattttggtccttaaa 32597432  T
Q  245 tttgtgagacaatgtcattatgtataaaaaatgccaacaaataaaacccctgatttgcgttgattttacattgctaattaaaagaagaagatattagagc 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||          |||||||||||||||||||||||||||||||||||    
T  32597433 tttgtgagacaatgtcattatgtataaaaaatgccaacaaataaaacccccgatt----------ttacattgctaattaaaagaagaagatattagagc 32597522  T
Q  345 ttataaggaaatgcaaatgtgggaatctgcaaatcatgactcaaacgtgtagctatttagcaattattttggtcagtatctaaggtcctatattgaggtt 444  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32597523 ttataaggaaatgcaaatgtgggaatctgcatatcatgactcaaacgtgtagctatttagcaattattttggtcagtatctaaggtcctatattgaggtt 32597622  T

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Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 32597156 - 32597297
Alignment:
Q  12 tattctatccattctatagtgaaatcattgctatgt-------tgggtccgtcttttctgcggttaatttggtttttgtgaggctttgttgcaattctgc 104  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32597156 tattctatccattctatagtgaaatcattgctatgtggttgtttgggtccgtcttttctgcggttaatttggtttttgtgaggctttgttgcaattctgc 32597255  T
Q  105 aagtataaaacaagcaggaatactatcatttttgctgccagc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32597256 aagtataaaacaagcaggaatactatcatttttgctgccagc 32597297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 207 - 330
Target Start/End: Original strand, 32577320 - 32577449
Alignment:
Q  207 tattagtattggagtaaacaaacattttggtccttaaatttgtgagacaat----gtcatt--atgtataaaaaatgccaacaaataaaacccctgattt 300  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||||||   ||    || |||  ||||||||||||| |||||||||||||| ||||||      
T  32577320 tattagtattggattaaacaaccattttggtccttaaatgtgtgaggtcattctagttattgaatgtataaaaaattccaacaaataaaacacctgatca 32577419  T
Q  301 gcgttgattttacattgctaattaaaagaa 330  Q
    || |||||||||||||||||||||||||||    
T  32577420 gcattgattttacattgctaattaaaagaa 32577449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 32613843 - 32613893
Alignment:
Q  264 atgtataaaaaatgccaacaaataaaacccctgatttgcgttgattttaca 314  Q
    ||||||||||||| |||| |||||||||| ||||| ||| |||||||||||    
T  32613843 atgtataaaaaattccaaaaaataaaacctctgatctgcattgattttaca 32613893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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