View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14153_high_3 (Length: 434)
Name: NF14153_high_3
Description: NF14153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14153_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 25 - 420
Target Start/End: Complemental strand, 11078841 - 11078448
Alignment:
| Q |
25 |
tagacacaaaaggtaccatctcagtaatatgctttagttgctcctcatatgtttgctgcatatgctttttaagctctgatatttgtccttctgaatatcc |
124 |
Q |
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|||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11078841 |
tagacagaaaaggtaccatctcggtaatatgttttagctgctcctcatatgtttgctgcatatgctttttaagctctgatatttgtccttctgaatatcc |
11078742 |
T |
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| Q |
125 |
ttccaaggaataatcaacctttcttcgctctctatgcagtttcattgctcctttctgcaataaatatatgaattcacggatatcatgatacttttccaag |
224 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11078741 |
ttccaaggaat---caacctttctttgctctctatgcagtttcattgctcctttctgcaataaatatatgaattcactgatatcatgatacttttccaag |
11078645 |
T |
|
| Q |
225 |
atttaagaaacaagattgtaaaactagcaaaa-cctccacctttagttctgcaaataactcatttgtataaggttgcccgccattctgtgatactatcaa |
323 |
Q |
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||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
11078644 |
atttaagaaacaagattgtgaaacttgcaaaaacctctacctttagttctgcaaacaactcatctgtataaggttgcccgccattctgtaatactatcaa |
11078545 |
T |
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| Q |
324 |
gtttacaaacgagagaagtcgttgaacttgttcagatcgcttcttttcgtccttagtcttgttgtcaaagagaacacaacgattcccacacaaagag |
420 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
11078544 |
gtttacaaacgagagaagttgttgaacttgtccagatcgcttcttttcgtccttagtcttgttgtcaaagagaacgcaacgattgccacacaaagag |
11078448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 25 - 420
Target Start/End: Complemental strand, 11090215 - 11089816
Alignment:
| Q |
25 |
tagacacaaaaggtaccatctcagtaatatgctttagttgctcctcatatgtttgctgcatatgctttttaagctctgatatttgtccttctgaatatcc |
124 |
Q |
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| T |
11090215 |
tagacacaaaaagtaccatctcagtaatatgttttagctgatcctcatatgcctgcttcatatgctttttaagctctgatatttttccttctgaatatcc |
11090116 |
T |
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| Q |
125 |
ttccaagg---aataatcaacctttcttcgctctctatgcagtttcattgctcctttctgcaataaatatatgaattcacggatatcatgatacttttcc |
221 |
Q |
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||||| | |||||||| ||||| | || |||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
11090115 |
ttccagttccaaggaatcaaccattctttggtcgctatctagtttcattgctcctttctgcaatcaatatatgaattcacttatatcatgatacttttcc |
11090016 |
T |
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| Q |
222 |
aagatttaagaaacaagattgtaaaactagcaaaa-cctccacctttagttctgcaaataactcatttgtataaggttgcccgccattctgtgatactat |
320 |
Q |
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| T |
11090015 |
aagatttaagaaacaagattgtgaaactagcaaaaacctccacctttagttctgcaaataactcatgtgtatagggttgcccaccattctgcgatactat |
11089916 |
T |
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| Q |
321 |
caagtttacaaacgagagaagtcgttgaacttgttcagatcgcttcttttcgtccttagtcttgttgtcaaagagaacacaacgattcccacacaaagag |
420 |
Q |
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| T |
11089915 |
caagcttacaaacgatagaagttgtcgaacttgcccagatcgcttcttttggtcccaagtcttgttgtcaaagagaacacggcgattcccacacaaagag |
11089816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 264 - 418
Target Start/End: Complemental strand, 11112238 - 11112084
Alignment:
| Q |
264 |
ctttagttctgcaaataactcatttgtataaggttgcccgccattctgtgatactatcaagtttacaaacgagagaagtcgttgaacttgttcagatcgc |
363 |
Q |
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|||||||||| |||||||||| | ||||||| || || |||||||||||||||| || ||||||||| ||||||||| ||||||||||||||| | || |
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| T |
11112238 |
ctttagttctttgaataactcatctctataaggctgtccaccattctgtgatactaccatgtttacaaaagagagaagttgttgaacttgttcagtttgc |
11112139 |
T |
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| Q |
364 |
ttcttttcgtccttagtcttgttgtcaaagagaacacaacgattcccacacaaag |
418 |
Q |
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| T |
11112138 |
ttcttttcatccttagttttgttatcgaaaagcacacatcgattcccacacaaag |
11112084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 251 - 419
Target Start/End: Complemental strand, 11129323 - 11129155
Alignment:
| Q |
251 |
gcaaaacctccacctttagttctgcaaataactcatttgtataaggttgcccgccattctgtgatactatcaagtttacaaacgagagaagtcgttgaac |
350 |
Q |
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||||||||| |||||||||||| ||| ||||||| ||||||||| | || ||||||||||| | || || || ||||| ||||||||| ||||||| |
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| T |
11129323 |
gcaaaacctatacctttagttctttaaacaactcatctgtataaggccgtccaccattctgtgaaattaccacattcacaaaagagagaagttgttgaac |
11129224 |
T |
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| Q |
351 |
ttgttcagatcgcttcttttcgtccttagtcttgttgtcaaagagaacacaacgattcccacacaaaga |
419 |
Q |
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|||||||||| |||||||||| |||||||||||||| || || || ||||| ||||||||||||||||| |
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| T |
11129223 |
ttgttcagattgcttcttttcatccttagtcttgttatcgaaaagcacacatcgattcccacacaaaga |
11129155 |
T |
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