View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14153_high_5 (Length: 342)
Name: NF14153_high_5
Description: NF14153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14153_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 22 - 326
Target Start/End: Original strand, 32596754 - 32597057
Alignment:
| Q |
22 |
cgttgttatattttgagttcgacttgaagaatacattgcaaaatatgtcaagtctactcaataccaagttggataatgtttgctggaaaccccattctac |
121 |
Q |
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| T |
32596754 |
cgttgttatattttgagttcgacttgaagaatacattgcaaaatatgtcatgtctactcaataccaagttggataatgtttgctggaaaccccattctac |
32596853 |
T |
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| Q |
122 |
ggtctcaccctctctccttgtttagttgcttgaaagggtgtaaatgtagtctcagtctgtggtataaaatagtgtataaggtgtccaccctctctcctag |
221 |
Q |
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| T |
32596854 |
ggtctcaccctgtctccttgtttagttgcttgaa-gggtgtaaatgtagtctcagtctgtggtataaaatagtgtatatggtgtccaccctctctcctag |
32596952 |
T |
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| Q |
222 |
ttaaatggagagattacaatttgtacaagtgctcaatgtatacataagatgtatcactctaaacttcctttgttggcattaagggtaaagattgtaggaa |
321 |
Q |
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| T |
32596953 |
ttacatggagaaattacaatttgtacaagtgctcaatgtatacataagatgtatcactctaaatttcctttgttggcattaagggtaaagattgtaggaa |
32597052 |
T |
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| Q |
322 |
agaaa |
326 |
Q |
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||||| |
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| T |
32597053 |
agaaa |
32597057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 32667147 - 32667189
Alignment:
| Q |
50 |
gaatacattgcaaaatatgtcaagtctactcaataccaagttg |
92 |
Q |
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| T |
32667147 |
gaatacattacaaaatatgtcaagtctacacaatacaaagttg |
32667189 |
T |
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