View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14153_high_6 (Length: 211)

Name: NF14153_high_6
Description: NF14153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14153_high_6
NF14153_high_6
[»] chr5 (9 HSPs)
chr5 (30-196)||(30048262-30048428)
chr5 (33-191)||(16597926-16598079)
chr5 (32-168)||(10275512-10275647)
chr5 (32-93)||(12019839-12019900)
chr5 (32-93)||(37659777-37659838)
chr5 (32-93)||(7102920-7102981)
chr5 (32-93)||(16795219-16795280)
chr5 (32-93)||(30696346-30696407)
chr5 (32-93)||(40370793-40370854)
[»] chr3 (5 HSPs)
chr3 (46-190)||(22930867-22931011)
chr3 (32-170)||(9698554-9698692)
chr3 (32-168)||(43548690-43548826)
chr3 (32-93)||(21848178-21848239)
chr3 (32-93)||(54170890-54170951)
[»] chr4 (6 HSPs)
chr4 (32-170)||(27187112-27187250)
chr4 (32-168)||(31355654-31355790)
chr4 (32-95)||(43682726-43682789)
chr4 (62-197)||(53977803-53977938)
chr4 (68-168)||(20290477-20290577)
chr4 (32-93)||(44148108-44148169)
[»] chr2 (5 HSPs)
chr2 (32-168)||(13270074-13270210)
chr2 (46-170)||(17256253-17256377)
chr2 (32-83)||(42515385-42515436)
chr2 (32-93)||(8051942-8052003)
chr2 (32-93)||(36671601-36671662)
[»] chr8 (6 HSPs)
chr8 (32-168)||(1287802-1287938)
chr8 (32-93)||(41946366-41946427)
chr8 (32-93)||(201230-201291)
chr8 (32-93)||(316067-316128)
chr8 (32-93)||(30409349-30409410)
chr8 (32-93)||(43811029-43811090)
[»] chr6 (6 HSPs)
chr6 (32-168)||(23254527-23254663)
chr6 (32-93)||(17160643-17160704)
chr6 (32-168)||(21414145-21414281)
chr6 (32-93)||(8319050-8319111)
chr6 (32-93)||(17881025-17881086)
chr6 (32-93)||(27571278-27571339)
[»] scaffold0044 (1 HSPs)
scaffold0044 (32-93)||(48411-48472)
[»] chr7 (2 HSPs)
chr7 (32-93)||(27757947-27758008)
chr7 (32-93)||(7943629-7943690)
[»] chr1 (2 HSPs)
chr1 (32-93)||(26312563-26312624)
chr1 (32-93)||(39794945-39795006)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 4e-80; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 30048428 - 30048262
Alignment:
Q  30 attcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30048428 attcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaatgaactctg 30048329  T
Q  130 catttcttcaattttcaaagtttgcacatcctttgattcttttacggccaccactataaaatgaaat 196  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  30048328 catttcttcaattttcaaagttttcacatcctttgatttttttacggccaccactataaaataaaat 30048262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 191
Target Start/End: Original strand, 16597926 - 16598079
Alignment:
Q  33 catccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcat 132  Q
    |||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||       || |||||| |||| ||||||||||||| ||     
T  16597926 catctttcttcacagtttgaacttgcaaagcttgttgaatttatctttcactgcttctttc-----ccatcaattcatgtgcttccaaagaactcttcag 16598020  T
Q  133 ttcttcaattttcaaagtttgcacatcctttgattcttttacggccaccactataaaat 191  Q
    ||||| ||| |||||||||| |||||| || ||||||| || | |||| ||||| ||||    
T  16598021 ttcttgaatcttcaaagttttcacatctttcgattcttgtatgtccactactatgaaat 16598079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 10275647 - 10275512
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgca 131  Q
    ||||||||||| | ||||||||||||||  ||||||||||||||||||| ||| ||||||||||  |  || |||||| |||| ||||| ||||||||||    
T  10275647 tcatccttcttgatagtttgaacttgtagggcttgttgaattgatcttt-actgcttctttcagttaccatcaattcatgtgcttccaatgaactctgca 10275549  T
Q  132 tttcttcaattttcaaagtttgcacatcctttgattc 168  Q
     ||| ||||| ||||| || | |||||||||||||||    
T  10275548 attcctcaatcttcaatgtcttcacatcctttgattc 10275512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 12019900 - 12019839
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    ||||||||||| | |||||||||||| || ||||||||||||||||||||| | ||||||||    
T  12019900 tcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgcttctttc 12019839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 37659838 - 37659777
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    ||||||||||| | |||||||||||| || ||||||||||||||||||||| | ||||||||    
T  37659838 tcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgcttctttc 37659777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 7102920 - 7102981
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    |||||||| || | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  7102920 tcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 7102981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 16795280 - 16795219
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    |||||||| || | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  16795280 tcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 16795219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 30696407 - 30696346
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    ||||||||||| | |||||||||||| |  |||||| |||||||||||||| | ||||||||    
T  30696407 tcatccttcttgatagtttgaacttgcagggcttgtcgaattgatctttcattgcttctttc 30696346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 40370793 - 40370854
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    ||||||||||| | |||||||||||| |  ||||||||||||||| ||||| | ||||||||    
T  40370793 tcatccttcttgatagtttgaacttgcagggcttgttgaattgatttttcattgcttctttc 40370854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 46 - 190
Target Start/End: Original strand, 22930867 - 22931011
Alignment:
Q  46 agtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttc 145  Q
    |||||||||||| ||   ||||||||||||||||||||||||||||||| |||  || |||||| |||||||||||||||| |||| ||||||||| |||    
T  22930867 agtttgaacttgcaattgttgttgaattgatctttcactacttctttcatacaccatcaattcatgtgcctccaaagaactatgcaattcttcaatcttc 22930966  T
Q  146 aaagtttgcacatcctttgattcttttacggccaccactataaaa 190  Q
    || || | ||||||  ||||||||| || |||||| |||||||||    
T  22930967 aaggtattcacatctgttgattcttgtatggccacaactataaaa 22931011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 9698692 - 9698554
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgca 131  Q
    ||||||||||| | ||||||||||||||  |||| |||||||||||||||||| ||||||||||  |  || |||||| |||| ||||| ||||||||||    
T  9698692 tcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttaccatcaattcatgtgcttccaatgaactctgca 9698593  T
Q  132 tttcttcaattttcaaagtttgcacatcctttgattctt 170  Q
     ||| ||||| ||||| || | |||||||||||||||||    
T  9698592 attcctcaatcttcaatgtcttcacatcctttgattctt 9698554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 43548826 - 43548690
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgca 131  Q
    ||||||||||| | ||||||||||| ||  ||||||||||||||||||||||| ||||||||||  |  ||  ||||| |||| || || |||| |||||    
T  43548826 tcatccttcttgatagtttgaacttttagggcttgttgaattgatctttcactgcttctttcagttaccatcgattcatgtgcttctaatgaacactgca 43548727  T
Q  132 tttcttcaattttcaaagtttgcacatcctttgattc 168  Q
     ||| ||||| ||||| || | |||||||||||||||    
T  43548726 attcctcaatcttcaatgtcttcacatcctttgattc 43548690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 21848239 - 21848178
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  21848239 tcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 21848178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 54170890 - 54170951
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  54170890 tcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 54170951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 27187250 - 27187112
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgca 131  Q
    ||||||||||| | ||||||||||||||  |||| |||||||||||||||||| ||||||||||  |  || |||||| |||| ||||| ||||||||||    
T  27187250 tcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttaccatcaattcatgtgcttccaatgaactctgca 27187151  T
Q  132 tttcttcaattttcaaagtttgcacatcctttgattctt 170  Q
     ||| ||||| ||||| || | |||||||||||||||||    
T  27187150 attcctcaatcttcaatgtcttcacatcctttgattctt 27187112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 31355790 - 31355654
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgca 131  Q
    |||| |||||| | ||||||||||||||  ||||||||||||||||||||||| ||| ||||||  |  || |||||| |||| ||||| ||||||||||    
T  31355790 tcatacttcttgatagtttgaacttgtagggcttgttgaattgatctttcacttcttgtttcagttaccatcaattcatgtgcttccaatgaactctgca 31355691  T
Q  132 tttcttcaattttcaaagtttgcacatcctttgattc 168  Q
     ||||||||| ||||| || | |||||||||||||||    
T  31355690 attcttcaatcttcaatgtcttcacatcctttgattc 31355654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 43682726 - 43682789
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcag 95  Q
    ||||||||||| | ||||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  43682726 tcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgcttctttcag 43682789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 197
Target Start/End: Complemental strand, 53977938 - 53977803
Alignment:
Q  62 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 161  Q
    ||||||| ||||||||||||||| ||||| |   | || || |||||| | |  ||||| ||||| |||| ||||||||| |||||| ||| ||||||||    
T  53977938 gcttgttaaattgatctttcactccttctcttgaaaatcatcaattcatgagtttccaatgaactttgcaattcttcaatcttcaaatttttcacatcct 53977839  T
Q  162 ttgattcttttacggccaccactataaaatgaaata 197  Q
    |||||||||  |  || ||||||||||||| |||||    
T  53977838 ttgattcttgaattgcaaccactataaaatcaaata 53977803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 20290577 - 20290477
Alignment:
Q  68 tgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgatt 167  Q
    ||||||||||||||||| ||||| ||| | |  || | || | | |||||||| ||||| | || ||||||||| |||||||||| ||||||||||||||    
T  20290577 tgaattgatctttcactgcttctctcataaaccatcagtttatgagcctccaaggaacttttcaattcttcaatcttcaaagttttcacatcctttgatt 20290478  T
Q  168 c 168  Q
    |    
T  20290477 c 20290477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 44148169 - 44148108
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    |||||||| || | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  44148169 tcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 44148108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 13270074 - 13270210
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgca 131  Q
    ||||||||||| | ||||||||||||||  ||||||||||||||||||||||| ||||||||||  |  || |||||| |||| || || ||||||||||    
T  13270074 tcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgcttctttcagttaccatcaattcatgtgcttctaatgaactctgca 13270173  T
Q  132 tttcttcaattttcaaagtttgcacatcctttgattc 168  Q
     ||||||||| ||||| || | |||||| ||||||||    
T  13270174 attcttcaatcttcaatgtcttcacatcttttgattc 13270210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 17256377 - 17256253
Alignment:
Q  46 agtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttc 145  Q
    |||||||||||| ||| ||||||||||||||||||||   ||||| ||||| |  || |||||| | || ||||  ||||| |||| |||| |||| |||    
T  17256377 agtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttccagtgaactttgcaattctacaatcttc 17256278  T
Q  146 aaagtttgcacatcctttgattctt 170  Q
    || |||| ||||||||| |||||||    
T  17256277 aaggttttcacatccttagattctt 17256253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 42515436 - 42515385
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcac 83  Q
    ||||||||||| | ||||||||||||||  ||||||||||||||||||||||    
T  42515436 tcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcac 42515385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 8052003 - 8051942
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    |||||||| || | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  8052003 tcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 8051942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 36671662 - 36671601
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    |||||||| || | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  36671662 tcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 36671601  T

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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 1287938 - 1287802
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgca 131  Q
    ||||||||||| | |||||||| |||||  ||||||| ||||||||||||||| ||||||||||  |  || |||||| |||| || || ||||||||||    
T  1287938 tcatccttcttgatagtttgaatttgtagggcttgttaaattgatctttcactgcttctttcagttaccatcaattcatgtgcttctaatgaactctgca 1287839  T
Q  132 tttcttcaattttcaaagtttgcacatcctttgattc 168  Q
     ||| ||||| ||||| || | |||||||||||||||    
T  1287838 attcctcaatcttcaatgtcttcacatcctttgattc 1287802  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 41946427 - 41946366
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  41946427 tcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcaatgcttctttc 41946366  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 201230 - 201291
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    |||||||| || | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  201230 tcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 201291  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 316067 - 316128
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    |||||||| || | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  316067 tcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 316128  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 30409349 - 30409410
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    |||||||| || | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  30409349 tcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 30409410  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 43811029 - 43811090
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    |||||||| || | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  43811029 tcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 43811090  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 23254663 - 23254527
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgca 131  Q
    ||||| ||||||| |||||||||||| || |||||||||||||||||||||||  |||| ||||| |  || ||||||   || ||||| || || ||||    
T  23254663 tcatctttcttcatagtttgaacttgcaaggcttgttgaattgatctttcactgattctctcagaaaccatcaattcatcagcttccaatgatctttgca 23254564  T
Q  132 tttcttcaattttcaaagtttgcacatcctttgattc 168  Q
     ||||||||| | ||| |||| |||||| ||||||||    
T  23254563 attcttcaatctacaatgttttcacatcatttgattc 23254527  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 17160704 - 17160643
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    ||||||||||| | |||||||||||  || ||||||||||||||||||||||| ||||||||    
T  17160704 tcatccttcttgatagtttgaactttcaaggcttgttgaattgatctttcactgcttctttc 17160643  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 21414145 - 21414281
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgca 131  Q
    |||||||||||   ||||||||||||||  ||||||||| ||||| |||||||  |||||||||  |  || |||||| |||| || || ||||||| ||    
T  21414145 tcatccttcttggtagtttgaacttgtagggcttgttgagttgatttttcactgtttctttcagttaccatcaattcatgtgcttctaatgaactcttca 21414244  T
Q  132 tttcttcaattttcaaagtttgcacatcctttgattc 168  Q
     ||| ||||| ||||| || | |||||||||||||||    
T  21414245 attcctcaatcttcaatgtcttcacatcctttgattc 21414281  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 8319050 - 8319111
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  8319050 tcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 8319111  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 17881025 - 17881086
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  17881025 tcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 17881086  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 27571278 - 27571339
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  27571278 tcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 27571339  T

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Target: scaffold0044 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 48411 - 48472
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    ||||||||||| | |||||||||||| || ||||||||||||||||||||| | ||||||||    
T  48411 tcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgcttctttc 48472  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 27758008 - 27757947
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  27758008 tcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 27757947  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 7943629 - 7943690
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    |||||||| || | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  7943629 tcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 7943690  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 26312624 - 26312563
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    |||||||| || | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  26312624 tcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 26312563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 39795006 - 39794945
Alignment:
Q  32 tcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 93  Q
    |||||||| || | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  39795006 tcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 39794945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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