View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14153_low_1 (Length: 474)
Name: NF14153_low_1
Description: NF14153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14153_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 43349424 - 43349088
Alignment:
| Q |
11 |
gaagaaaaccatacttcaattcacttaaaatcttcacagcagtatttatatttcggtagatttttccagtaaacgtttggactgataataaattaccttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43349424 |
gaagaaaaccatacttcaattcacttaaaatcttcacagcagtatttatatttcggtagatttttccagtaaacgtttggactgataataaattaccttt |
43349325 |
T |
|
| Q |
111 |
aaaaata---taatattacaataagannnnnnnnattcaattgacataataattatagaagcctaaatctagataaggttgtgatctggctccaaaagat |
207 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43349324 |
aaaaatagtataatattacaataagattttttt-attcaattgacataataattatagaagcctaaatctagataaggttgtgatctggctccaaaagat |
43349226 |
T |
|
| Q |
208 |
gtcttggacaatagaagataatacctaaaaagaaacaataatagtggtgcaaggtatatttatctaattgagctcccagttagggataaaacatagacca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43349225 |
gtcttggacaatagaagataatacctaaaaagaaacaataatagtggtgcaagatatatttatctcattgagctcccagttagggataaaacatagacca |
43349126 |
T |
|
| Q |
308 |
gcaagaaaaggattatggtcaaactgttgcacttataca |
346 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||||||||| |
|
|
| T |
43349125 |
gcaaggaaaggattatggtcaaaccgtt-cacttataca |
43349088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 385 - 458
Target Start/End: Complemental strand, 43349066 - 43348996
Alignment:
| Q |
385 |
ctcatcctctcacaccagtacatgtctcttccactcttatcaaataatcaaacacagttttttctcgttctctc |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| |
|
|
| T |
43349066 |
ctcatcctctcacaccagtacatgtctcttccactcttatca---aatcaaacacagttttctctcattctctc |
43348996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University