View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14153_low_4 (Length: 350)
Name: NF14153_low_4
Description: NF14153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14153_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 6433017 - 6433356
Alignment:
| Q |
1 |
gcatatgaatctttctttaccaatgttatttccatgctttctgttttttgttttgcatattgttcttctttggattccagttgtatgtatgcatggtcta |
100 |
Q |
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| T |
6433017 |
gcatatgaatctttctttaccaatgttatttccatgctttctgttttttgttttgcatattgttcttctttggattccagttgtatgtatgcatggtcta |
6433116 |
T |
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| Q |
101 |
ttgtcttttttgaatgttctcgattttcatatagaaatagcttatattttggaagcatat--agccgatgtaattaaaatatctctgtttgaacctctgt |
198 |
Q |
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| T |
6433117 |
ttgtcttttttgaacgttctcgattttcatatagaaatagcttatattttggaaacatttgccggcgatgtaattaaaatatctctgtttgaacctctgt |
6433216 |
T |
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| Q |
199 |
acattcttcaagccatatatatgcaaccatggctttagatgcatgttgttggcttgtttttcctcattgatcagaagtaag--cagaaaaaatcacatag |
296 |
Q |
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| T |
6433217 |
acattcttcatgccatatatctgcaaccatggctttagatgtatgctgttggcttgtttttcctcattgatcagaagtaagtacagaaaaaaacacatag |
6433316 |
T |
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| Q |
297 |
actgaaagagtgtgttgtttgatttgcaatcagaattgtg |
336 |
Q |
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| T |
6433317 |
actgaaagagtgtgttgtttgatttgcaatcagaattgtg |
6433356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 44187156 - 44187191
Alignment:
| Q |
242 |
tgttgttggcttgtttttcctcattgatcagaagta |
277 |
Q |
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| T |
44187156 |
tgttgttggcttgttttacctcattgatcagaagta |
44187191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 44186604 - 44186672
Alignment:
| Q |
86 |
tgtatgcatggtctattgtcttttttgaatgttctcgattttcatatagaaatagcttatattttggaa |
154 |
Q |
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| T |
44186604 |
tgtatgcatggtcttttgtctttactgaatgccctcaattttcctatagaaatagtgtacattttggaa |
44186672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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