View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14154_high_16 (Length: 237)

Name: NF14154_high_16
Description: NF14154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14154_high_16
NF14154_high_16
[»] chr1 (8 HSPs)
chr1 (1-115)||(31433576-31433690)
chr1 (40-94)||(31975116-31975169)
chr1 (42-94)||(12127991-12128044)
chr1 (40-97)||(1820995-1821052)
chr1 (40-97)||(11597762-11597819)
chr1 (40-92)||(16063512-16063564)
chr1 (1-95)||(31317321-31317415)
chr1 (48-97)||(41451761-41451810)
[»] chr7 (5 HSPs)
chr7 (40-97)||(20337436-20337493)
chr7 (40-94)||(19896682-19896736)
chr7 (48-94)||(39497193-39497239)
chr7 (40-97)||(1471179-1471236)
chr7 (42-94)||(1284541-1284593)
[»] chr2 (9 HSPs)
chr2 (41-94)||(20532354-20532407)
chr2 (40-94)||(44977391-44977445)
chr2 (40-97)||(9521933-9521990)
chr2 (40-97)||(44050140-44050197)
chr2 (40-95)||(16199603-16199658)
chr2 (47-93)||(11091252-11091298)
chr2 (47-93)||(22525889-22525935)
chr2 (40-97)||(3412443-3412500)
chr2 (41-94)||(5054064-5054117)
[»] chr8 (3 HSPs)
chr8 (41-97)||(24795375-24795431)
chr8 (47-93)||(30439399-30439445)
chr8 (56-96)||(2621922-2621962)
[»] chr6 (6 HSPs)
chr6 (42-89)||(34084526-34084573)
chr6 (40-94)||(30945939-30945993)
chr6 (40-97)||(30956197-30956254)
chr6 (52-94)||(4820504-4820546)
chr6 (47-92)||(5028160-5028205)
chr6 (45-93)||(5442639-5442687)
[»] chr3 (14 HSPs)
chr3 (40-94)||(34627773-34627827)
chr3 (40-97)||(52564538-52564595)
chr3 (41-92)||(11075270-11075321)
chr3 (40-90)||(55361129-55361179)
chr3 (41-94)||(11056825-11056878)
chr3 (40-97)||(26488169-26488226)
chr3 (47-94)||(45754772-45754819)
chr3 (40-94)||(4859412-4859466)
chr3 (40-94)||(4870553-4870607)
chr3 (40-94)||(4879420-4879474)
chr3 (42-95)||(34662127-34662180)
chr3 (49-97)||(37035414-37035462)
chr3 (64-92)||(42673700-42673728)
chr3 (41-93)||(54007588-54007640)
[»] chr4 (12 HSPs)
chr4 (40-97)||(27371266-27371323)
chr4 (1-94)||(52430964-52431057)
chr4 (2-97)||(33093005-33093100)
chr4 (40-95)||(26148093-26148148)
chr4 (47-94)||(34317091-34317138)
chr4 (40-94)||(1797713-1797767)
chr4 (41-95)||(18767986-18768040)
chr4 (40-94)||(39654949-39655003)
chr4 (47-93)||(43769843-43769889)
chr4 (49-94)||(34616695-34616740)
chr4 (47-104)||(47099152-47099209)
chr4 (49-97)||(24509276-24509324)
[»] chr5 (4 HSPs)
chr5 (40-95)||(24405846-24405901)
chr5 (47-93)||(19839879-19839925)
chr5 (47-97)||(27546198-27546248)
chr5 (41-94)||(33655305-33655358)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 31433576 - 31433690
Alignment:
Q  1 ctattattttggttttcgtgtcaatacctacannnnnnngtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacctgat 100  Q
    |||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31433576 ctattattttagttttcgtgtcaatacctacattactttgtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacctgat 31433675  T
Q  101 aagacatttgtccaa 115  Q
    |||||||||||||||    
T  31433676 aagacatttgtccaa 31433690  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 31975116 - 31975169
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||    
T  31975116 gtaaatctatagttgtcttataagttatcata-aaatagttgttcaaataacaca 31975169  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 12127991 - 12128044
Alignment:
Q  42 aaatctatggttgtctcataagttatc-atacaaatagttgttcaaataacaca 94  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  12127991 aaatctatggttgtcccataagttatcaatacaaatggttgttcaaataacaca 12128044  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 1821052 - 1820995
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    ||||||||||| ||||| |||||||| ||||||||| | |||||||||| ||||||||    
T  1821052 gtaaatctatgattgtcacataagttgtcatacaaacaattgttcaaatcacacacct 1820995  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 11597762 - 11597819
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    ||||||||||||||||| |||||||| |||  ||||| | ||||||||||||||||||    
T  11597762 gtaaatctatggttgtcccataagttgtcaagcaaatggatgttcaaataacacacct 11597819  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 16063564 - 16063512
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataaca 92  Q
    |||||| |||||||||| || || |||||| ||||||||||||||||||||||    
T  16063564 gtaaatttatggttgtcccaaaaattatcacacaaatagttgttcaaataaca 16063512  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 31317415 - 31317321
Alignment:
Q  1 ctattattttggttttcgtgtcaatacctacannnnnnngtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacac 95  Q
    |||||||||| |||| |||||||||| |||||       ||||||||||| ||||| || || || ||| |||||| |||||| |||||||||||    
T  31317415 ctattattttagtttccgtgtcaatatctacatttctttgtaaatctatgattgtcccaaaaattgtcacacaaattgttgtttaaataacacac 31317321  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 41451761 - 41451810
Alignment:
Q  48 atggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    |||| |||||| |||||| ||||| |||| ||||||||||||||||||||    
T  41451761 atggatgtctcgtaagttgtcatataaatggttgttcaaataacacacct 41451810  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 20337436 - 20337493
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  20337436 gtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacct 20337493  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 19896682 - 19896736
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    ||||||||||| ||||| ||||||||||| || ||||  ||||||||||||||||    
T  19896682 gtaaatctatgcttgtcccataagttatcgtataaatgattgttcaaataacaca 19896736  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 39497239 - 39497193
Alignment:
Q  48 atggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    |||||||||| ||||||||||||  |||| |||||||||||||||||    
T  39497239 atggttgtcttataagttatcattgaaatggttgttcaaataacaca 39497193  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 1471236 - 1471179
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    |||||| ||||||||||  ||||||| ||   ||||||||||||||||||||||||||    
T  1471236 gtaaatttatggttgtcaaataagttgtctatcaaatagttgttcaaataacacacct 1471179  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 1284541 - 1284593
Alignment:
Q  42 aaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    |||| |||| |||| ||| ||||||||||| |||| |||||||||||||||||    
T  1284541 aaatttatgattgtatcaaaagttatcataaaaatggttgttcaaataacaca 1284593  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 20532407 - 20532354
Alignment:
Q  41 taaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    ||||| ||||||| || |||||||||||||||||||||||||||||||||||||    
T  20532407 taaatttatggttatcccataagttatcatacaaatagttgttcaaataacaca 20532354  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 44977445 - 44977391
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    |||||| ||||||||||||||||||| || | ||||| |||||||||||||||||    
T  44977445 gtaaatttatggttgtctcataagttttcgttcaaatggttgttcaaataacaca 44977391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 9521933 - 9521990
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    |||||| ||||||||||||| ||||||||| |||||||  | ||||||||||||||||    
T  9521933 gtaaatttatggttgtctcaaaagttatcacacaaataaatattcaaataacacacct 9521990  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 44050140 - 44050197
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    |||||| ||||||||||||| ||||| ||  |||||| ||||||||||||||||||||    
T  44050140 gtaaatttatggttgtctcaaaagttgtcgcacaaatggttgttcaaataacacacct 44050197  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 16199658 - 16199603
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacac 95  Q
    |||||| |||||||||  ||||| |||||||||||||| || ||||||||||||||    
T  16199658 gtaaatttatggttgtaccataaattatcatacaaataattattcaaataacacac 16199603  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 11091298 - 11091252
Alignment:
Q  47 tatggttgtctcataagttatcatacaaatagttgttcaaataacac 93  Q
    |||||||||||||||| ||||||  ||||| ||||||||||||||||    
T  11091298 tatggttgtctcataaattatcaaccaaattgttgttcaaataacac 11091252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 22525935 - 22525889
Alignment:
Q  47 tatggttgtctcataagttatcatacaaatagttgttcaaataacac 93  Q
    ||||||||||||| |||||||||  ||||| ||||||||||||||||    
T  22525935 tatggttgtctcaaaagttatcaatcaaatggttgttcaaataacac 22525889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 3412500 - 3412443
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    |||||| ||||||||| ||| ||||| ||| | ||||||||||||||| |||||||||    
T  3412500 gtaaatttatggttgtttcaaaagttgtcacataaatagttgttcaaacaacacacct 3412443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 5054117 - 5054064
Alignment:
Q  41 taaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    ||||| ||||||||||||| ||||| ||||| |||||||| || ||||||||||    
T  5054117 taaatttatggttgtctcaaaagttgtcatataaatagttttttaaataacaca 5054064  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 24795375 - 24795431
Alignment:
Q  41 taaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  24795375 taaatttatggttgtctcataagttgtcaaacaaatagttgttcaaataacatacct 24795431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 30439445 - 30439399
Alignment:
Q  47 tatggttgtctcataagttatcatacaaatagttgttcaaataacac 93  Q
    |||||||||| ||||||||||||  ||||| ||||||||||||||||    
T  30439445 tatggttgtcacataagttatcaaccaaatggttgttcaaataacac 30439399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 2621922 - 2621962
Alignment:
Q  56 ctcataagttatcatacaaatagttgttcaaataacacacc 96  Q
    |||||||||| ||||||||||  ||||||||||||||||||    
T  2621922 ctcataagttgtcatacaaatgattgttcaaataacacacc 2621962  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 34084573 - 34084526
Alignment:
Q  42 aaatctatggttgtctcataagttatcatacaaatagttgttcaaata 89  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  34084573 aaatttatggttgtctcataagttgtcatacaaatagttgttcaaata 34084526  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 30945939 - 30945993
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    ||||||||||||||||  |||||||| |||||||||| |||||||||||||||||    
T  30945939 gtaaatctatggttgttccataagttttcatacaaatggttgttcaaataacaca 30945993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 30956197 - 30956254
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    ||||||||||||||||| |||||||| ||||| |||| ||||||||||||||| ||||    
T  30956197 gtaaatctatggttgtcccataagttttcatataaatggttgttcaaataacaaacct 30956254  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 4820504 - 4820546
Alignment:
Q  52 ttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    |||||||| ||||||||||  ||||||||||||||||||||||    
T  4820504 ttgtctcaaaagttatcatgtaaatagttgttcaaataacaca 4820546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 5028205 - 5028160
Alignment:
Q  47 tatggttgtctcataagttatcatacaaatagttgttcaaataaca 92  Q
    |||||||||||||||||||||||  |||||  ||||||||||||||    
T  5028205 tatggttgtctcataagttatcaaccaaatgattgttcaaataaca 5028160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 5442687 - 5442639
Alignment:
Q  45 tctatggttgtctcataagttatcatacaaatagttgttcaaataacac 93  Q
    |||||| ||||||| |||||||||||||||||  || ||||||||||||    
T  5442687 tctatgattgtctcctaagttatcatacaaatgattcttcaaataacac 5442639  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 34627827 - 34627773
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    |||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  34627827 gtaaatttatggttgtcttataagttatcataaaaataattgttcaaataacaca 34627773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 52564595 - 52564538
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    ||||||||||||||||| |||||||| ||||| |||| ||||||||||||||| ||||    
T  52564595 gtaaatctatggttgtcccataagttgtcatagaaatggttgttcaaataacatacct 52564538  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 11075321 - 11075270
Alignment:
Q  41 taaatctatggttgtctcataagttatcatacaaatagttgttcaaataaca 92  Q
    ||||| ||||||||||||| ||||| |||||||||| |||||||||||||||    
T  11075321 taaatttatggttgtctcaaaagttgtcatacaaatggttgttcaaataaca 11075270  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 55361179 - 55361129
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataa 90  Q
    ||||||| ||||||||| |||||||| |||| |||||||||||||||||||    
T  55361179 gtaaatcaatggttgtcacataagttttcattcaaatagttgttcaaataa 55361129  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 11056878 - 11056825
Alignment:
Q  41 taaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    ||||| ||||||||||||| ||||| | |||||||| |||||||||||||||||    
T  11056878 taaatttatggttgtctcaaaagttgttatacaaatggttgttcaaataacaca 11056825  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 26488226 - 26488169
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    |||||||||||||||| | | ||||||| ||| |||| ||||||||||||||||||||    
T  26488226 gtaaatctatggttgtattaaaagttattatataaatggttgttcaaataacacacct 26488169  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 45754772 - 45754819
Alignment:
Q  47 tatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    ||||||||||| |||||||||||  ||||| |||||||||||||||||    
T  45754772 tatggttgtctaataagttatcaatcaaatggttgttcaaataacaca 45754819  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 4859412 - 4859466
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    |||||||||| |||||||||||| ||||| |  |||| |||||||||||||||||    
T  4859412 gtaaatctatagttgtctcataaattatcgttaaaattgttgttcaaataacaca 4859466  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 4870553 - 4870607
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    |||||||||| |||||||||||| ||||| |  |||| |||||||||||||||||    
T  4870553 gtaaatctatagttgtctcataaattatcgttaaaattgttgttcaaataacaca 4870607  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 4879420 - 4879474
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    |||||||||| |||||||||||| ||||| |  |||| |||||||||||||||||    
T  4879420 gtaaatctatagttgtctcataaattatcgttaaaattgttgttcaaataacaca 4879474  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 34662127 - 34662180
Alignment:
Q  42 aaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacac 95  Q
    |||||||| |||||| |||||||||||||| |||  ||| ||||||||||||||    
T  34662127 aaatctatagttgtcccataagttatcatataaaaggttattcaaataacacac 34662180  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 37035462 - 37035414
Alignment:
Q  49 tggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    |||||||| || |||||||||| |||||  |||||||||||||||||||    
T  37035462 tggttgtcacaaaagttatcattcaaatgattgttcaaataacacacct 37035414  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 92
Target Start/End: Original strand, 42673700 - 42673728
Alignment:
Q  64 ttatcatacaaatagttgttcaaataaca 92  Q
    |||||||||||||||||||||||||||||    
T  42673700 ttatcatacaaatagttgttcaaataaca 42673728  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 54007588 - 54007640
Alignment:
Q  41 taaatctatggttgtctcataagttatcatacaaatagttgttcaaataacac 93  Q
    ||||| ||||||||||| ||||||| ||||||| || || |||||||||||||    
T  54007588 taaatttatggttgtcttataagttgtcatacagatggtcgttcaaataacac 54007640  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 27371266 - 27371323
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    |||||| ||||||||||||||||||| ||| | |||| ||||||||||||||||||||    
T  27371266 gtaaatttatggttgtctcataagttctcaaataaattgttgttcaaataacacacct 27371323  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 52430964 - 52431057
Alignment:
Q  1 ctattattttggttttcgtgtcaatacctacannnnnnngtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    |||||||||||||||| |||||||||| |||        ||||| ||||  |||||||||| ||| |||||||||| |||||||||||||||||    
T  52430964 ctattattttggtttttgtgtcaatacttacttttgtttgtaaagctataattgtctcataggttgtcatacaaatggttgttcaaataacaca 52431057  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 33093100 - 33093005
Alignment:
Q  2 tattattttggttttcgtgtcaatacctacannnnnnngtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    |||| |||||||||||||||||||||||||        ||||||  |   ||||||||||||||||| || |||| ||||||||||||||||||||    
T  33093100 tattgttttggttttcgtgtcaatacctacttttctttgtaaattaactattgtctcataagttatcgtataaatggttgttcaaataacacacct 33093005  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 26148148 - 26148093
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacac 95  Q
    |||||||||||||||| | ||||||| | |||||||| ||||||||||||| ||||    
T  26148148 gtaaatctatggttgttttataagttgttatacaaatggttgttcaaataaaacac 26148093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 34317091 - 34317138
Alignment:
Q  47 tatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    |||||||||||| |||||||| ||| ||||||||||| ||||||||||    
T  34317091 tatggttgtctcgtaagttatgatataaatagttgtttaaataacaca 34317138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 1797767 - 1797713
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    ||||||||||| ||||||| |||||| |||| ||||| || ||||||||||||||    
T  1797767 gtaaatctatgattgtctcgtaagttgtcattcaaatggtagttcaaataacaca 1797713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 18767986 - 18768040
Alignment:
Q  41 taaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacac 95  Q
    ||||| ||||||||||| | ||||||||| ||||||| ||||| |||||||||||    
T  18767986 taaatttatggttgtcttaaaagttatcacacaaataattgtttaaataacacac 18768040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 39654949 - 39655003
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    |||||| ||||||||||| | || |||||||  ||||||||||||||||||||||    
T  39654949 gtaaatttatggttgtcttaaaaattatcatctaaatagttgttcaaataacaca 39655003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 43769843 - 43769889
Alignment:
Q  47 tatggttgtctcataagttatcatacaaatagttgttcaaataacac 93  Q
    |||||||||| ||||||||||||   |||||||||||||||||||||    
T  43769843 tatggttgtcgcataagttatcaacaaaatagttgttcaaataacac 43769889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 34616695 - 34616740
Alignment:
Q  49 tggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    ||||||||||| ||||| ||||| |||||| |||||||||||||||    
T  34616695 tggttgtctcaaaagttgtcatataaatagatgttcaaataacaca 34616740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 47099152 - 47099209
Alignment:
Q  47 tatggttgtctcataagttatcatacaaatagttgttcaaataacacacctgataaga 104  Q
    |||||||||| || |||||||||  ||||| |||||||||||||||| ||| ||||||    
T  47099152 tatggttgtcccaaaagttatcaaccaaatggttgttcaaataacactcctcataaga 47099209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 24509324 - 24509276
Alignment:
Q  49 tggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    |||||||| || || ||||||  ||||||||||||||||||||||||||    
T  24509324 tggttgtcacaaaaattatcactcaaatagttgttcaaataacacacct 24509276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 24405901 - 24405846
Alignment:
Q  40 gtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacac 95  Q
    |||||| ||| ||||| ||| ||||| ||| |||||||||||||||||||||||||    
T  24405901 gtaaatttatagttgtttcaaaagttgtcaaacaaatagttgttcaaataacacac 24405846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 19839925 - 19839879
Alignment:
Q  47 tatggttgtctcataagttatcatacaaatagttgttcaaataacac 93  Q
    |||||||||| || |||||||||  ||||||||||||||||||||||    
T  19839925 tatggttgtcccaaaagttatcaaccaaatagttgttcaaataacac 19839879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 27546198 - 27546248
Alignment:
Q  47 tatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 97  Q
    |||| |||||||| ||||| ||| |||||||||| ||||||||||||||||    
T  27546198 tatgattgtctcaaaagttgtcacacaaatagttattcaaataacacacct 27546248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 33655358 - 33655305
Alignment:
Q  41 taaatctatggttgtctcataagttatcatacaaatagttgttcaaataacaca 94  Q
    ||||| |||||||||  || ||||||||||| |||||||| |||||||||||||    
T  33655358 taaatttatggttgtaccaaaagttatcataaaaatagttattcaaataacaca 33655305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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