View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14154_high_2 (Length: 503)
Name: NF14154_high_2
Description: NF14154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14154_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 1172841 - 1172504
Alignment:
| Q |
1 |
ttctcactttcaggtatgcatattaaactcttaatattaatttcagcatgtatatatattatcgctatcgaatttattgtttgtttgttcatgcatgtgc |
100 |
Q |
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| T |
1172841 |
ttctcactttcaggtatgcatattaaactcttaatattaatttcagcatgtatatatattatcgctatcgaatttattgtttgtttgttcatgcatgtgc |
1172742 |
T |
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| Q |
101 |
ctaagtaagtcagaatgccttatttatgattgatgtttcaacatgttcaattcttaatattaattttaatatcaagttgatttgctaatccactcttgta |
200 |
Q |
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| T |
1172741 |
ctaagtaagtc-gaat-------ttattgtt--tgttt------gttcgattcttaatattaattttaatatcaagttgatttgctaatccattgt-gta |
1172659 |
T |
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| Q |
201 |
ataggttgtcattaattggaccagtttttagggttacactttagattctcaattttcgtctcaccctttatataactccctttcctaaaccctaaaccct |
300 |
Q |
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| T |
1172658 |
ataggttgtcattaattggaccagtttttaggggtacactttagactctcaattctcatctcaccctttatataactccctttccaaaaccctaaaccct |
1172559 |
T |
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| Q |
301 |
accaatgactaaagttcaaaatctattttgcaggttctgtgtctggacattgttt |
355 |
Q |
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| T |
1172558 |
accaatgactaaagttcaaaatctattttgcaggttctgtgtctggacattgttt |
1172504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 353 - 503
Target Start/End: Complemental strand, 1172479 - 1172329
Alignment:
| Q |
353 |
tttgcaaagaagcccttaggcctagcatgaagataatactttctgtactcttcctattgatgatctcaagtgctcaagctttgaaccaaaacgatgggtt |
452 |
Q |
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| T |
1172479 |
tttgcaaagaatcccttaggcctagcatgaagataatactttctgtactcttcctattgatgatctcaagtgctcaagctttgaaccaaaacgatgggtt |
1172380 |
T |
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| Q |
453 |
catggaaagtcggaatgatcacaaacatgaactatctcttcctataagaaa |
503 |
Q |
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| T |
1172379 |
cgtggaaagtcggaatgatcacaaacatgaactatctcttactataagaaa |
1172329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 370 - 503
Target Start/End: Complemental strand, 1165104 - 1164971
Alignment:
| Q |
370 |
aggcctagcatgaagataatactttctgtactcttcctattgatgatctcaagtgctcaagctttgaaccaaaacgatgggttcatggaaagtcggaatg |
469 |
Q |
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| T |
1165104 |
aggcctaccatgaaggtaatactttctgtactgttcatattgatgatctcaagtgctcaagctttgaaccaccatgatgggttcgcggaaagtcggaatg |
1165005 |
T |
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| Q |
470 |
atcacaaacatgaactatctcttcctataagaaa |
503 |
Q |
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| T |
1165004 |
atcacaaacatgaactatcccatactataagaaa |
1164971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 287
Target Start/End: Complemental strand, 1181907 - 1181795
Alignment:
| Q |
171 |
atcaagttgatttgctaatccactcttgtaataggttgtcattaattggaccagtttttagggttacactttagattctcaattttcgtctcacccttta |
270 |
Q |
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| T |
1181907 |
atcaagttgatttgctaatccattgtagtaataggtcgtcatt----ggacccgtttttagggctccacattagattctcagttctcttctcacctttta |
1181812 |
T |
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| Q |
271 |
tataactccctttccta |
287 |
Q |
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| T |
1181811 |
tatatctccctttccta |
1181795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 1182431 - 1182388
Alignment:
| Q |
60 |
tatcgctatcgaatttattgtttgtttgttcatgcatgtgccta |
103 |
Q |
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| T |
1182431 |
tatcgctatcgaatttattgtttgtttgttcatgcatgtgccta |
1182388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 1160387 - 1160317
Alignment:
| Q |
433 |
ttgaaccaaaacgatgggttcatggaaagtcggaatgatcacaaacatgaactatctcttcctataagaaa |
503 |
Q |
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| T |
1160387 |
ttgaaccacaaagatgggtttgtggaaagtcaaaatgcacacaaacatgaactatctgttactataagaaa |
1160317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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